Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq16550 93.3 3e-14 seq8889 89.7 4e-13 seq8384 84.2 2e-11 seq7910 84.2 2e-11 seq4675 84.2 2e-11 >seq16550 Length=20979 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/233 (70%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | |||||| ||||| | || | || || ||||||||||||||||| || ||| Sbjct 18360 CCTCCCCTCAACCTCAACACAAGATGGAGGGTTGATTCCTTTTGAATATTGTAGTCTGCC 18419 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || | ||||| ||||| || || ||| | || | || |||||||| ||| Sbjct 18420 AGGGTCCTGCCATCCTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCTGGGGGG 18479 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC-CG 18992 | || |||||||| ||||| | |||| | ||| ||| | ||| |||| || Sbjct 18480 ATACCTTCTTTGTCTTGGATTTT-GGCCTTACATTATCGATAGT---GTCAGAGCTCTCG 18535 Query 18993 -TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||||| || ||||| ||||| || | ||| || ||||| || ||||| || Sbjct 18536 ACTTCGAGAGTGATGGTCTTACCCGTGAGAGTCTTAACAAAGATCTGCATATT 18588 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || | |||||| | ||| | || | ||||||||||| ||||| || ||||| ||| Sbjct 17676 CCACCCCTCAACCTCAGCACAAGATGGAGTGTAGACTCCTTCTGAATGTTATAATCTGCC 17735 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | || || | || || ||||||||||| ||| | ||||| ||||||||||| Sbjct 17736 AACGTCCTGCCATCTTCAAGCTGTTTACCTGCAAAGATAAGCCTCTGCTGATC 17788 >seq8889 Length=9065 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | ||||||||||| ||||| |||||||| || | ||| | || || Sbjct 2280 CACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGTCCATCTTC 2221 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||||| ||| | || || |||||||| || || | ||||| || || Sbjct 2220 CAATTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCCTG 2161 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | | | | |||||| || |||| || | || |||||||| Sbjct 2160 AATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTCCACCTCCAAAGTGATGGTTTT 2101 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| |||||||| || ||||| |||||| Sbjct 2100 TCCTGTCAAAGTTTTAAC-AAAATCTGCATT 2071 >seq8384 Length=24589 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||||||||| |||||||| |||| || ||||||| ||||| || || Sbjct 3554 GTTGATTCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGCTTTCCA 3495 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||||| || ||| | || |||||||| |||||| || Sbjct 3494 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTGGATTTTCGCCTTA 3435 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTTTTACCTGTTAAA 19021 || | ||| ||| | ||| |||| || ||||| || ||||||||||| || | | Sbjct 3434 ACATTATCGATAGT---GTCAGAGCTCTCGACTTCGAGAGTGATGGTTTTACCAGTAAGA 3378 Query 19022 GTTTTGACAAAAATTTGCATTTT 19044 || || ||||| || ||||| || Sbjct 3377 GTCTTAACAAAGATCTGCATATT 3355 >seq7910 Length=9655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||||||||| |||||||| |||| || ||||||| ||||| || || Sbjct 1790 GTTGATTCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGCTTTCCA 1731 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||||| || ||| | || |||||||| |||||| || Sbjct 1730 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTGGATTTTCGCCTTA 1671 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTTTTACCTGTTAAA 19021 || | ||| ||| | ||| |||| || ||||| || ||||||||||| || | | Sbjct 1670 ACATTATCGATAGT---GTCAGAGCTCTCGACTTCGAGAGTGATGGTTTTACCAGTAAGA 1614 Query 19022 GTTTTGACAAAAATTTGCATTTT 19044 || || ||||| || ||||| || Sbjct 1613 GTCTTAACAAAGATCTGCATATT 1591 >seq4675 Length=16269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||||||||| |||||||| |||| || ||||||| ||||| || || Sbjct 15941 GTTGATTCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGCTTTCCA 15882 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||||| || ||| | || |||||||| |||||| || Sbjct 15881 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTGGATTTTCGCCTTA 15822 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTTTTACCTGTTAAA 19021 || | ||| ||| | ||| |||| || ||||| || ||||||||||| || | | Sbjct 15821 ACATTATCGATAGT---GTCAGAGCTCTCGACTTCGAGAGTGATGGTTTTACCAGTAAGA 15765 Query 19022 GTTTTGACAAAAATTTGCATTTT 19044 || || ||||| || ||||| || Sbjct 15764 GTCTTAACAAAGATCTGCATATT 15742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414471368934550