Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq13411 102 5e-17 seq5340 102 5e-17 >seq13411 Length=19963 Score = 102 bits (112), Expect = 5e-17 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 ||||||| | ||| || || |||||||| | || || |||||||| |||||||| || | Sbjct 11490 CACCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGG 11431 Query 33201 ACAAATTGAGTTG--GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 || || || ||| || | ||| || || ||| ||||||||||| ||||| | Sbjct 11430 CTAA--TGTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGG 11373 Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||||||||| || |||| ||| || | | || |||||| || || Sbjct 11372 TGGGATGCCTTCTTTGTCTTGAATCTTGGCTTTCACATTGTCGATTGTGTCGGAGGATTC 11313 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || | ||||| ||||| || || | ||||||||||| || ||||| || Sbjct 11312 GACTTCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCATTTT 11259 >seq5340 Length=22833 Score = 102 bits (112), Expect = 5e-17 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 ||||||| | ||| || || |||||||| | || || |||||||| |||||||| || | Sbjct 14261 CACCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGG 14320 Query 33201 ACAAATTGAGTTG--GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 || || || ||| || | ||| || || ||| ||||||||||| ||||| | Sbjct 14321 CTAA--TGTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGG 14378 Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||||||||| || |||| ||| || | | || |||||| || || Sbjct 14379 TGGGATGCCTTCTTTGTCTTGAATCTTGGCTTTCACATTGTCGATTGTGTCGGAGGATTC 14438 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || | ||||| ||||| || || | ||||||||||| || ||||| || Sbjct 14439 GACTTCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCATTTT 14492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318699606577350