Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq16550 95.1 9e-15 seq16006 95.1 9e-15 seq10926 95.1 9e-15 seq5280 95.1 9e-15 seq8384 89.7 4e-13 seq7910 89.7 4e-13 seq8889 84.2 2e-11 >seq16550 Length=20979 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGA-CGCTCATCGTCCAATTG 43977 || || ||| ||| || ||||| || ||||| | || || || |||| |||||||| Sbjct 17244 TGAAGGGTGGACTCCTTCTGAATGTTGTAATC-TGCAAGTGTGCGTCCATCTTCCAATTG 17302 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||| ||||| || ||||||| |||||||| | || | || || ||||| || || Sbjct 17303 TTTCCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCCTGTATCTT 17362 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||||| || ||| ||||||| | |||||| || | ||||| ||||| || || Sbjct 17363 GGCCTTGACATTATCAATCGTATCTGAAGACTCCACCTCCAAAGTAATGGTTTTTCCAGT 17422 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 || ||||| ||||| || ||||| Sbjct 17423 CAACGTCTTGACAAAGATCTGCAT 17446 Score = 86.0 bits (94), Expect = 4e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 43960 ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACC 44019 |||| |||| || | ||||||||||||||| || | || ||||||||| | || | || Sbjct 17513 ACGCCCATCTTCGAGTTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATTCC 17572 Query 44020 TTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGAC 44079 ||||||||| ||| || ||||| | ||| ||||| | || || || | Sbjct 17573 TTCTTTATCCTGAATCTTAGCCTTGACATTGTCAATCGTATCAGAACTTTCAACCTCTAA 17632 Query 44080 CGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||||||| ||||| || ||||| ||||| || ||||| Sbjct 17633 AGTGATTGTTTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 17674 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||| || ||||| | ||| || || || ||||||||||| || || | Sbjct 18359 ACCTCCCCTCAACCTCAACACAAGATGGAGGGTTGATTCCTTTTGAATATTGTAGTC-TG 18417 Query 43954 TAATTGAC--GCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGA 44011 | | | || |||| || | || ||||| ||||| ||||||| |||||| || | Sbjct 18418 CCAGGGTCCTGC-CATCCTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCTGGG 18476 Query 44012 GGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCC 44071 || | ||||||||| ||| | |||| | | || || | | ||| || | ||| Sbjct 18477 GGGATACCTTCTTTGTCTTGGA-TTTTGGCCTTACATTATCGATAGTGTCAGAGCTCTCG 18535 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||| || || || ||||| || | |||||| ||||| || ||||| Sbjct 18536 ACTTCGAGAGTGATGGTCTTACCCGTGAGAGTCTTAACAAAGATCTGCAT 18585 >seq16006 Length=16259 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || ||||| || | ||||||||| || || |||||| || ||||| || || | Sbjct 13489 CCACCCCTCAACCTCAGCACCAAATGAAGGGTAGACTCTTTCTGGATATTGTAGTCTGCT 13430 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | |||| |||| || | |||||||||||||| || | || ||||||||| | || Sbjct 13429 AGAGTACGCCCATCTTCGAGCTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGCGGG 13370 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || |||||||| ||| || ||||| | ||| ||||| | || || Sbjct 13369 ATCCCCTCTTTATCCTGAATCTTAGCCTTGACGTTGTCAATCGTATCAGAACTTTCAACC 13310 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || || || ||||||||||| ||||| Sbjct 13309 TCTAAAGTGATGGTTTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 13263 >seq10926 Length=11099 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGA-CGCTCATCGTCCAATTG 43977 || || ||| ||| || ||||| || ||||| | || || || |||| |||||||| Sbjct 7824 TGAAGGGTGGACTCCTTCTGAATGTTGTAATC-TGCAAGTGTGCGTCCATCTTCCAATTG 7882 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||| ||||| || ||||||| |||||||| | || | || || ||||| || || Sbjct 7883 TTTCCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCCTGTATCTT 7942 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||||| || ||| ||||||| | |||||| || | ||||| ||||| || || Sbjct 7943 GGCCTTGACATTATCAATCGTATCTGAAGACTCCACCTCCAAAGTAATGGTTTTTCCAGT 8002 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 || ||||| ||||| || ||||| Sbjct 8003 CAACGTCTTGACAAAGATCTGCAT 8026 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || ||||| || | |||||| || || || |||||| || || || ||||| | Sbjct 8256 CCACCCCTCAACCTCAGCACCAAGTGAAGGGTAGACTCTTTCTGGATGTTGTAATCAGCT 8315 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | ||| |||| || | |||||||||||||| || | || ||||||||| | || Sbjct 8316 AGAGTACGACCATCTTCAAGCTGTTTTCCTGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 8375 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| || || ||||| | ||| ||||| | || || Sbjct 8376 ATTCCTTCTTTATCTTGGATCTTAGCCTTGACGTTGTCAATGGTATCCGAGCTTTCAACC 8435 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || ||||| |||||||| || ||||| Sbjct 8436 TCCAAAGTAATGGTTTTCCCTGTCAAAGTTTTCACAAAAATCTGCAT 8482 Score = 86.0 bits (94), Expect = 4e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 43960 ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACC 44019 |||| |||| || | ||||||||||||||| || | || ||||||||| | || | || Sbjct 8093 ACGCCCATCTTCGAGTTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATTCC 8152 Query 44020 TTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGAC 44079 ||||||||| ||| || ||||| | ||| ||||| | || || || | Sbjct 8153 TTCTTTATCCTGAATCTTAGCCTTGACATTGTCAATCGTATCAGAACTTTCAACCTCTAA 8212 Query 44080 CGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||||||| ||||| || ||||| ||||| || ||||| Sbjct 8213 AGTGATTGTTTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 8254 >seq5280 Length=29361 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGT 43970 ||| | ||| || ||| ||| || |||||||| ||||| | || || ||| |||| | Sbjct 6981 CACAAGATGAAGGGTGGACTCCTTCTGAATATTGTAATC-TGCAAGTGTACGTCCATCTT 6923 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 |||||||||| || || || ||||||| ||||| || | || | || || ||||| Sbjct 6922 CCAATTGTTTCCCAGCGAAGATCAACCTCTGCTGATCTGGTGGGATCCCCTCCTTATCCT 6863 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||| || ||||| | ||| ||||| | | |||||| || | || || |||| Sbjct 6862 GAATCTTGGCCTTGACATTGTCAATCGTATCAGAAGACTCCACCTCCAAAGTGATGGTTT 6803 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || ||||||||||| || ||||| Sbjct 6802 TCCCTGTCAAGGTCTTCACAAAAATCTGCAT 6772 >seq8384 Length=24589 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||| |||||| || ||||||||||||| ||||||||| | || | || || | Sbjct 4198 CATCTTCCAGTTGTTTACCAGCAAATATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCT 4139 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || ||||| || ||| |||||| | || ||||| || | || | Sbjct 4138 TATCCTGAATCTTGGCCTTGACATTATCAATAGTATCAGACGATTCCACCTCCAAAGTGA 4079 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || || || || || ||||| || ||||| Sbjct 4078 TGGTTTTCCCTGTCAAGGTTTTAACAAAGATCTGCAT 4042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || ||| || ||||| |||||||| || ||| | || || Sbjct 4022 ACCAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGCCAAAGTACGTCCGTCCTCA 3963 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || || || ||||| ||||||| |||||||| | || | ||||| |||||| Sbjct 3962 AGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGG 3903 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| ||||| | ||| ||||| | ||| || || | ||||||||||| Sbjct 3902 ATCTTTGCCTTGACGTTGTCAATGGTATCCGAACTCTCAACCTCCAAAGTAATTGTTTTT 3843 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || ||||||||||| ||||| Sbjct 3842 CCTGTCAAGGTTTTCACAAATATCTGCAT 3814 >seq7910 Length=9655 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||| |||||| || ||||||||||||| ||||||||| | || | || || | Sbjct 2434 CATCTTCCAGTTGTTTACCAGCAAATATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCT 2375 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || ||||| || ||| |||||| | || ||||| || | || | Sbjct 2374 TATCCTGAATCTTGGCCTTGACATTATCAATAGTATCAGACGATTCCACCTCCAAAGTGA 2315 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || || || || || ||||| || ||||| Sbjct 2314 TGGTTTTCCCTGTCAAGGTTTTAACAAAGATCTGCAT 2278 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || ||| || ||||| |||||||| || ||| | || || Sbjct 2258 ACCAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGCCAAAGTACGTCCGTCCTCA 2199 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || || || ||||| ||||||| |||||||| | || | ||||| |||||| Sbjct 2198 AGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGG 2139 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| ||||| | ||| ||||| | ||| || || | ||||||||||| Sbjct 2138 ATCTTTGCCTTGACGTTGTCAATGGTATCCGAACTCTCAACCTCCAAAGTAATTGTTTTT 2079 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || ||||||||||| ||||| Sbjct 2078 CCTGTCAAGGTTTTCACAAATATCTGCAT 2050 >seq8889 Length=9065 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || ||| || ||||| ||||||||| || ||| |||| || Sbjct 2052 ACCAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCGGCCAAAGTACGTCCATCCTCA 1993 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||||| || ||||| ||||||| |||||||| | || | ||||| |||||| Sbjct 1992 AGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGG 1933 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||||| | ||| ||||| | ||| || || | || || ||||| Sbjct 1932 ATCTTAGCCTTGACGTTGTCAATGGTATCAGAGCTCTCAACCTCCAAAGTGATGGTTTTT 1873 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||||||||| || ||||| Sbjct 1872 CCCGTCAATGTCTTCACAAAGATCTGCAT 1844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354690798671100