Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq13411 95.1 1e-14 seq5340 95.1 1e-14 seq16550 82.4 6e-11 seq10926 82.4 6e-11 >seq13411 Length=19963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| | || |||||||| || || ||||||||||| || ||||| ||| | Sbjct 11488 CCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCT 11429 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | ||||| | ||||||||| ||| | || | | ||||| || || Sbjct 11428 AATGTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGG 11369 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||||||| ||| || |||||| | | | | | ||| | ||| | Sbjct 11368 ATGCCTTCTTTGTCTTGAATCTTGGCTTTCACATTGTCGATTGTGTCGGAGGATTCGACT 11309 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || | ||| || ||||||||||| || ||||| || || || |||||||| Sbjct 11308 TCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCATTTT 11259 >seq5340 Length=22833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| | || |||||||| || || ||||||||||| || ||||| ||| | Sbjct 14263 CCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCT 14322 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | ||||| | ||||||||| ||| | || | | ||||| || || Sbjct 14323 AATGTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGG 14382 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||||||| ||| || |||||| | | | | | ||| | ||| | Sbjct 14383 ATGCCTTCTTTGTCTTGAATCTTGGCTTTCACATTGTCGATTGTGTCGGAGGATTCGACT 14442 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || | ||| || ||||||||||| || ||||| || || || |||||||| Sbjct 14443 TCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCATTTT 14492 >seq16550 Length=20979 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 19991 AACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTA 20050 |||| || ||||| || || ||||| || || || |||||||| || ||| ||| Sbjct 17457 AACCGCAGTACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTACGC 17516 Query 20051 GAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCT 20110 |||||| | |||||| || ||| | |||||||| || || || || | |||||| Sbjct 17517 CCATCTTCGAGTTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATTCCTTCT 17576 Query 20111 TTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTA 20170 || || ||| || || || | | ||| | ||| | ||| || | || Sbjct 17577 TTATCCTGAATCTTAGCCTTGACATTGTCAATCGTATCAGAACTTTCAACCTCTAAAGTG 17636 Query 20171 ATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||||||||| ||||||||||| ||||| Sbjct 17637 ATTGTTTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 17674 >seq10926 Length=11099 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 19991 AACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTA 20050 |||| || ||||| || || ||||| || || || |||||||| || ||| ||| Sbjct 8037 AACCGCAGTACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTACGC 8096 Query 20051 GAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCT 20110 |||||| | |||||| || ||| | |||||||| || || || || | |||||| Sbjct 8097 CCATCTTCGAGTTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATTCCTTCT 8156 Query 20111 TTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTA 20170 || || ||| || || || | | ||| | ||| | ||| || | || Sbjct 8157 TTATCCTGAATCTTAGCCTTGACATTGTCAATCGTATCAGAACTTTCAACCTCTAAAGTG 8216 Query 20171 ATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||||||||| ||||||||||| ||||| Sbjct 8217 ATTGTTTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 8254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419484542091075