Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq945 196 4e-45 >seq945 Length=6199 Score = 196 bits (216), Expect = 4e-45 Identities = 378/553 (68%), Gaps = 11/553 (2%) Strand=Plus/Minus Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 || ||| || ||||| || ||||| || || ||||| ||| | |||||||||||| || Sbjct 2221 CAAACACGCGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGT 2162 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA---CCCGa 13263 || ||||||||| | ||| |||||||| | |||||| || || ||||| || ||||| Sbjct 2161 TAAACCCGGCATTAACCCACGTTTTTTCAACCAAAAAATCGC-GCAAA--AACTCCCCGA 2105 Query 13264 aaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTT 13323 ||||||||| ||||| || |||||||| || | || ||| | || | || Sbjct 2104 AAAAAATATCCCTTCGACGCAAGCAAACGCGATAATCCGTTC----TGCGAAAGTTTCGG 2049 Query 13324 A-CTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTA 13382 | | || ||||| || |||||||| ||||||| | ||| || || |||| | Sbjct 2048 ATCCATCAATCCATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAA 1989 Query 13383 TTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC 13442 | || |||||| |||||||| ||| ||| |||||||| || | ||| || | Sbjct 1988 TAGCCCGAAATAACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAAC 1929 Query 13443 TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCT 13502 |||||||||| ||||||||||| || ||||| |||||||| || ||||| | |||| Sbjct 1928 TATACATTTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCACGCGCCT 1869 Query 13503 CTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCAC 13562 | | || || ||||| ||| | | || | ||||||| ||| || ||||| Sbjct 1868 CGGCGACTTGGACTTCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTG 1809 Query 13563 TAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTA 13622 || || |||||||| || | ||| |||| || | |||| || | || Sbjct 1808 ACGCGGCGAAAAAAGCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAGGCGT 1749 Query 13623 ACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAG 13682 ||| | | ||||| |||||||| || || || |||||||||| || || | | Sbjct 1748 CCCAGTGACGTTGATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCGG 1689 Query 13683 CCTTCTTATACAT 13695 | || |||||||| Sbjct 1688 CTTTTTTATACAT 1676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430876954095150