Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq10926 102 7e-17 seq5280 95.1 1e-14 seq8384 93.3 4e-14 seq7910 93.3 4e-14 seq4675 93.3 4e-14 seq8889 82.4 6e-11 >seq10926 Length=11099 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | |||||| | ||| | ||| || || |||||||| ||||||||||| || Sbjct 8709 ACCTCCCCTCAACCTCAGCACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAATCTGC 8768 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| ||| ||||||| |||||||| || | | || || | ||| || || || Sbjct 8769 CAAGGTACGCCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGTGG 8828 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| |||||| ||||| | | |||||||| | ||| Sbjct 8829 GATCCCTTCCTTGTCCTGGATTTTCGCCTTGACATTATCGATGGTATCTGAGCTCTCGAC 8888 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || | |||||| || ||||| |||||||| |||||||| Sbjct 8889 CTCGAGAGTGATAG-TTTACC-GTAAGAGTCTTCACAAAGATCTGCAT 8934 >seq5280 Length=29361 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | |||||| | ||| | ||| || || |||||||| || ||||| || || Sbjct 6543 ACCTCCCCTCAACCTCAGCACAAGATGGAGGGTCGATTCCTTTTGGATATTGTAGTCTGC 6484 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | ||||| |||||||| ||| | | || | | |||||| || || Sbjct 6483 CAATGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGG 6424 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC-CG 48677 | | ||||||||| |||||| ||| | | | |||||||| | || ||| || Sbjct 6423 GATCCCTTCCTTGTCTTGGATTTTCGCCTTAACATTATCGATGGTATCTG-AG-CTCTCG 6366 Query 48678 TCT-CGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | | || ||||| ||||| ||||||||||| ||||| |||||||| Sbjct 6365 ACTTCAAGAGTGATGGTCTTACCAGTGAGAGTTTTAACAAAGATCTGCAT 6316 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| | |||||| ||| |||||| ||||| |||||||| || || ||| || | || | Sbjct 6981 CACAAGATGAAGGGTGGACTCCTTCTGAATATTGTAATCTGC-AAGTGTACGTCCATCTT 6923 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||| || || || || | || || | ||||||||| || | | ||||| ||| Sbjct 6922 CCAATTGTTTCCCAGCGAAGATCAACCTCTGCTGATCTGGTGGGATCCCCTCCTTATCCT 6863 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||||| | | || ||||| | ||||||| ||| | || ||||||| Sbjct 6862 GAATCTTGGCCTTGACATTGTCAATCGTATCAGAAGACTCCACCTCCAAAGTGATGGTTT 6803 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | || ||||||||||||||||| Sbjct 6802 TCCCTGTCAAGGTCTTCACAAAAATCTGCAT 6772 >seq8384 Length=24589 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || ||||| |||||| |||||| |||||||||||||||| ||| || || | ||||| Sbjct 3794 ACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAG-CAAGGGTACGTCCATCCTC 3736 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || |||| || | |||||| || || | || ||| |||||| Sbjct 3735 AAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTG 3676 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGT-AGA-CTC-CGTC-TCGACTGTTATGG 48692 || || ||| |||| ||| | | || ||| ||| || | || | || |||| Sbjct 3675 GATCTTAGCCTT----GACGTTATCGATTGTGTCAGAGCTCTCGACTTCCAAAGTGATGG 3620 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || |||||||| || ||||| |||||||| Sbjct 3619 TTTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 3586 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | |||||| | || | ||| || || |||||||||||||||||||| || Sbjct 3585 ACCGCCCCTCAACCTGAGAACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAATCGGC 3526 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || ||||||| |||||||| || | | || || | |||||| || || Sbjct 3525 CAAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 3466 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC-CG 48677 | | ||| ||||| |||||| ||| | | | || || || | || ||| || Sbjct 3465 GATCCCTTCTTTGTCTTGGATTTTCGCCTTAACATTATCGATAGTGTCAG-AG-CTCTCG 3408 Query 48678 TC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||| || ||||||||||| || ||||| || ||||| |||||||| Sbjct 3407 ACTTCGAGAGTGATGGTTTTACCAGTAAGAGTCTTAACAAAGATCTGCAT 3358 >seq7910 Length=9655 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || ||||| |||||| |||||| |||||||||||||||| ||| || || | ||||| Sbjct 2030 ACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAG-CAAGGGTACGTCCATCCTC 1972 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || |||| || | |||||| || || | || ||| |||||| Sbjct 1971 AAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTG 1912 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGT-AGA-CTC-CGTC-TCGACTGTTATGG 48692 || || ||| |||| ||| | | || ||| ||| || | || | || |||| Sbjct 1911 GATCTTAGCCTT----GACGTTATCGATTGTGTCAGAGCTCTCGACTTCCAAAGTGATGG 1856 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || |||||||| || ||||| |||||||| Sbjct 1855 TTTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 1822 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | |||||| | || | ||| || || |||||||||||||||||||| || Sbjct 1821 ACCGCCCCTCAACCTGAGAACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAATCGGC 1762 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || ||||||| |||||||| || | | || || | |||||| || || Sbjct 1761 CAAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 1702 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC-CG 48677 | | ||| ||||| |||||| ||| | | | || || || | || ||| || Sbjct 1701 GATCCCTTCTTTGTCTTGGATTTTCGCCTTAACATTATCGATAGTGTCAG-AG-CTCTCG 1644 Query 48678 TC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||| || ||||||||||| || ||||| || ||||| |||||||| Sbjct 1643 ACTTCGAGAGTGATGGTTTTACCAGTAAGAGTCTTAACAAAGATCTGCAT 1594 >seq4675 Length=16269 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || ||||| |||||| |||||| |||||||||||||||| ||| || || | ||||| Sbjct 16181 ACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAG-CAAGGGTACGTCCATCCTC 16123 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || |||| || | |||||| || || | || ||| |||||| Sbjct 16122 AAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTG 16063 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGT-AGA-CTC-CGTC-TCGACTGTTATGG 48692 || || ||| |||| ||| | | || ||| ||| || | || | || |||| Sbjct 16062 GATCTTAGCCTT----GACGTTATCGATTGTGTCAGAGCTCTCGACTTCCAAAGTGATGG 16007 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || |||||||| || ||||| |||||||| Sbjct 16006 TTTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 15973 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | |||||| | || | ||| || || |||||||||||||||||||| || Sbjct 15972 ACCGCCCCTCAACCTGAGAACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAATCGGC 15913 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || ||||||| |||||||| || | | || || | |||||| || || Sbjct 15912 CAAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 15853 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC-CG 48677 | | ||| ||||| |||||| ||| | | | || || || | || ||| || Sbjct 15852 GATCCCTTCTTTGTCTTGGATTTTCGCCTTAACATTATCGATAGTGTCAG-AG-CTCTCG 15795 Query 48678 TC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||| || ||||||||||| || ||||| || ||||| |||||||| Sbjct 15794 ACTTCGAGAGTGATGGTTTTACCAGTAAGAGTCTTAACAAAGATCTGCAT 15745 >seq8889 Length=9065 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| |||||||||||||||| ||| ||| || | || |||| || Sbjct 2273 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCAG-CAAGTGTCCGTCCATCTTCCAATTG 2215 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | | || | | |||||| || || | | ||||| ||| ||| || Sbjct 2214 TTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTT 2155 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || ||||| | ||||||| ||| | || |||||||| || || Sbjct 2154 GGCCTTGACATTGTCAATAGTATCAGAAGACTCCACCTCCAAAGTGATGGTTTTTCCTGT 2095 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | |||||| || ||||||||||| Sbjct 2094 CAAAGTTTTAAC-AAAATCTGCAT 2072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421148134970075