Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq13883 111 8e-20 seq11566 111 8e-20 seq12921 109 3e-19 seq2873 109 3e-19 seq5550 107 1e-18 seq13065 104 1e-17 seq9110 104 1e-17 seq18847 102 4e-17 seq3081 102 4e-17 seq1877 102 4e-17 seq16149 100 1e-16 seq12465 100 1e-16 seq12209 100 1e-16 seq4852 87.8 9e-13 >seq13883 Length=34664 Score = 111 bits (122), Expect = 8e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 11878 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 11937 Query 11512 CAACTGAGCTAATGGGCCGT 11531 ||||||||||||| |||||| Sbjct 11938 CAACTGAGCTAATAGGCCGT 11957 >seq11566 Length=44243 Score = 111 bits (122), Expect = 8e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 11433 ATAGAATTAATAAAA-AATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||| || ||| |||| ||| ||| |||||||||| | | |||||||| ||||||||||| Sbjct 43123 ATATAACTAAAAAAACAATTAAAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG 43064 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| |||| |||||||||| |||| Sbjct 43063 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 43025 >seq12921 Length=40750 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | |||||||||||| | | |||||||| ||||| |||||||||||||| Sbjct 22632 AAAAAAAAAACGAATTGGCCCATGCAGGTCTCGAACCTGCGACCCCCGCGTTATTAGCAC 22573 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||| |||||||||||||||||||| Sbjct 22572 GATGCTCTAACCAACTGAGCTAATGGGCC 22544 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||| | ||||| ||||||||||||||| ||||| ||||| Sbjct 16336 TTGGCCCATGCAGGTCTCGAACTTGCGACCCCTGCGTTATTAGCACGATGCTCTAACCAA 16277 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 16276 CTGAGCTAATGGGCC 16262 Score = 87.8 bits (96), Expect = 9e-13 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCC-ATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| | ||||||||| ||| | | || ||||| ||||| ||| |||||||||||| Sbjct 22246 AAAAAGCCGAATTGGCCCCATGCAGGTCTCAAACCTGCGACCCCCGCATTATTAGCACGA 22187 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 22186 TGCTCTGACCAACTGAGCTAATGGGCC 22160 Score = 84.2 bits (92), Expect = 1e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 |||||||| | ||||||||| ||||| || ||||||||||||| ||||| |||||| Sbjct 22418 GGCCCATGCGTGTATCGAACCTGCGACCCCCGGGTTATTAGCACGATGCTCTAACCAACC 22359 Query 11517 GAGCTAATGGGCC 11529 ||||||||||||| Sbjct 22358 GAGCTAATGGGCC 22346 >seq2873 Length=18064 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 7605 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 7546 Query 11515 CTGAGCTAATGGGCCGT 11531 |||||||||| |||||| Sbjct 7545 CTGAGCTAATAGGCCGT 7529 >seq5550 Length=22123 Score = 107 bits (118), Expect = 1e-18 Identities = 79/92 (86%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || ||| ||||| || ||||||||| | | |||||||| |||||||||||||||||| Sbjct 14820 ATGAATGAAAAA---AAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAG 14876 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| ||||||||||||||| |||| Sbjct 14877 CACGACGCTCTAACCAACTGAGCTAATAGGCC 14908 >seq13065 Length=39471 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 21400 AATAAAAAATA----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 21455 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 21456 GACGCTCTAACCAGCTGAGCTAATAGGCC 21484 >seq9110 Length=12637 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 11348 AATAAAAAATA----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 11403 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 11404 GACGCTCTAACCAGCTGAGCTAATAGGCC 11432 >seq18847 Length=4596 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 2055 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1996 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 1995 CAGCTGAGCTAATAGGCC 1978 >seq3081 Length=15134 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||| ||| ||||||||||||||||||||||||||||| || Sbjct 1699 AAAGTGGCCCATGCAGGTCTCGATCCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1640 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1639 CAACTGAGCTAATAGGCC 1622 >seq1877 Length=14538 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||| ||| ||||||||||||||||||||||||||||| || Sbjct 1973 AAAGTGGCCCATGCAGGTCTCGATCCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1914 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1913 CAACTGAGCTAATAGGCC 1896 >seq16149 Length=26367 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 25712 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 25771 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 25772 TGAGCTAATAGGCC 25785 >seq12465 Length=10778 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 652 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 593 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 592 TGAGCTAATAGGCC 579 >seq12209 Length=13592 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3487 TGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3428 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3427 TGAGCTAATAGGCC 3414 >seq4852 Length=17939 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||| | ||||| ||||||||||||||| ||||| ||||| Sbjct 922 TTGGCCCATGCAGGTCTCGAACTTGCGACCCCTGCGTTATTAGCACGATGCTCTAACCAA 981 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 982 CTGAGCTAATGGGCC 996 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261427222500700