Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq14593 149 1e-31 seq13480 145 1e-30 seq16601 140 5e-29 seq5280 140 5e-29 seq10573 136 6e-28 seq11765 131 3e-26 seq2423 131 3e-26 seq6002 123 4e-24 seq16513 104 4e-18 seq7714 86.0 1e-12 >seq14593 Length=29170 Score = 149 bits (164), Expect = 1e-31 Identities = 196/269 (73%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||| | | || || || ||||||||||| || ||||||||||| || || Sbjct 27415 GCAAAACGACATCGTAAGGTC-CTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 27473 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| | || || || |||||| || || | | || || |||| Sbjct 27474 CCGCCGGTTGGCTCGCAGAGGCGGTGTGAAGCGTATCAGCGGTCTCATTTACGAGGAGAC 27533 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||||||| || | ||| ||| |||| ||| || | || || || Sbjct 27534 ACGTGGCGTGTTGAAGATATTTTTGGAGAACGTCATCCGTGACGCCGTGACTTACACGGA 27593 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| |||||| |||||||| |||| || || |||||||| || || Sbjct 27594 GCACGCTCGCCGGAAGACGGTCACCGCCATGGATGTCGTTTACGCCTTGAAACGCCAGGG 27653 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 ||||| | ||||||||||| |||||| Sbjct 27654 CCGTACTCTCTATGGTTTTGGTGGTTAAT 27682 >seq13480 Length=50491 Score = 145 bits (160), Expect = 1e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 |||||||| || |||||||| || || ||||||||| |||| ||| | || || || ||| Sbjct 9639 AACATCCAGGGTATCACCAAACCCGCCATCCGTCGTTTGGCACGTAGAGGCGGTGTGAAG 9580 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582 ||| || || || |||| ||||||| |||| || |||||||||| | ||| | Sbjct 9579 CGTATCAGCGGGCTGATCTACGAAGAGACACGTGGAGTCCTGAAGATCTTTTTGGAGAAC 9520 Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 || || | |||||| || ||| |||||||| ||| || ||||||||||| ||||| Sbjct 9519 GTCATTCGTGATGCCGTCACCTACACCGAGCATGCTCGCCGCAAGACTGTCACTGCCATG 9460 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | || ||||| | || | |||||||||| | |||||||| || Sbjct 9459 GATGTTGTTTATGCTCTCAAGAGACAAGGCCGTACTCTCTATGGTTTCGG 9410 >seq16601 Length=18068 Score = 140 bits (154), Expect = 5e-29 Identities = 172/233 (74%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || |||||||| || || ||||||||| |||| ||| | || || | Sbjct 8432 GATAACATCCAGGGTATCACCAAACC-GCCATCCGTCGTTTGGCACGTAGAGGGGGTG-- 8488 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || |||| ||||||| |||| || |||||||||| | || Sbjct 8489 AAGCGTATCAGCGGGCTGATCTACGAAGAGACACGTGGAGTCCTGAAGATCTTTTTGGAG 8548 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| || ||| |||||||| ||| || ||||||||||| || Sbjct 8549 AACGTCATTCGTGATGCCGTCACCTACACCGAGCATGCTCGCCGCAAGACTGTCACTGCC 8608 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||| | || ||||| | || | |||||||||| | |||||||| || Sbjct 8609 ATGGATGTTGTTTATGCTCTCAAGAGACAAGGCCGTACTCTCTATGGTTTCGG 8661 >seq5280 Length=29361 Score = 140 bits (154), Expect = 5e-29 Identities = 179/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || |||||||| || || ||||||||| ||||||| | ||| Sbjct 11098 CTCCGTGACAACATCCAGGGCATCACCAAACCCGCCATCCGTCGTTTGGCTCGCAGAGGT 11039 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || | | || || |||| |||| || ||||||||||| Sbjct 11038 GGCGTGAAGCGTATCAGCGGTCTCATTTACGAGGAGACACGTGGCGTGTTGAAGATCTTT 10979 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| || | ||| || || || || ||||||||| || || || ||| Sbjct 10978 TTGGAGAACGTGATTCGTGACGCCGTCACTTACACGGAGCACGCTCGCCGGAAAACCGTC 10919 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || || |||||||| || ||||||| | ||||||||||| Sbjct 10918 ACGGCGATGGATGTGGTTTACGCCTTGAAACGCCAGGGCCGTACCCTCTATGGTTTTGGT 10859 Query 16694 AGTTAAT 16700 |||||| Sbjct 10858 GGTTAAT 10852 >seq10573 Length=8145 Score = 136 bits (150), Expect = 6e-28 Identities = 192/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||| | | || || || || |||||||| || |||||||| || || || Sbjct 3683 GCAAAACGACATCGTAAGGTC-CTCCGTGACAACATCCAGGGTATCACCAAACCCGCCAT 3625 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||| || || || || || ||||| || || || | || ||||||| Sbjct 3624 CCGTCGTTTGGCGCGCCGAGGCGGTGTGAAGCGCATCAGCGGGCTGATTTACGAAGAGAC 3565 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||||||||| | ||| ||| || | |||||| || || ||||| Sbjct 3564 ACGTGGAGTCCTGAAGATCTTTTTGGAGAACGTCATTCGTGATGCCGTCACTTACACCGA 3505 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || |||||| |||||||| | || ||||| | || | ||||| Sbjct 3504 GCACGCTCGCCGCAAAACCGTCACCGCCATGGATGTGGTTTATGCTCTCAAGAGACAAGG 3445 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| |||| || ||||| |||| Sbjct 3444 CCGTACTCTTTACGGATTTGGTGGTTA 3418 >seq11765 Length=12656 Score = 131 bits (144), Expect = 3e-26 Identities = 195/270 (72%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||| | | || || || || |||||||| || ||||||||||| || || Sbjct 4552 GCAAAACGACATCGTAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 4610 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| | || || || |||||| || || | | ||||| |||| Sbjct 4611 CCGCCGGTTGGCTCGCAGAGGCGGTGTGAAGCGTATCAGCGGTCTCATTTATGAGGAGAC 4670 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||||||||| | ||| ||| |||| ||| || | || || || Sbjct 4671 ACGTGGCGTGTTGAAGATCTTTTTGGAGAACGTCATCCGTGACGCCGTGACTTACACGGA 4730 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| |||||| ||||||| |||| || || |||||||| || || Sbjct 4731 GCACGCTCGCCGGAAGACGGTCACCGCCATGGA-GTCGT-TACGCCTTGAAACGCCAGGG 4788 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 |||| | | |||||||| || |||| || Sbjct 4789 CCGT-ACCTCTATGGTTTCGGTGGTTATTC 4817 >seq2423 Length=6170 Score = 131 bits (144), Expect = 3e-26 Identities = 192/269 (71%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||| | | || || || || |||||||| || ||||||||||| || || Sbjct 4444 GCAAAACGACATCGTAAGGTC-CTCCGTGACAACATCCAGGGCATCACCAAGCCTGCCAT 4502 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||||| || || || || |||||| || || || | || || |||| Sbjct 4503 CCGTCGATTGGCTCGCCGAGGCGGTGTGAAGCGTATCAGCGGTCTGATTTACGAGGAGAC 4562 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||||||||| | ||| || || | ||| || | || || || Sbjct 4563 ACGTGGCGTGTTGAAGATCTTTTTGGAGAATGTGATTCGTGACGCCGTGACTTACACTGA 4622 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || || ||||| | |||||| | || || || |||||||| || || Sbjct 4623 ACACGCTCGCCGGAAAACCGTCACGGCGATGGATGTGGTTTACGCCTTGAAACGCCAGGG 4682 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 ||||| |||||||||| || |||||| Sbjct 4683 CCGTACACTTTATGGTTTCGGTGGTTAAT 4711 >seq6002 Length=15900 Score = 123 bits (136), Expect = 4e-24 Identities = 171/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 |||||||| || |||||||| || || ||||||||| |||| || | || || || ||| Sbjct 10771 AACATCCAGGGTATCACCAAACC-GCCATCCGTCGTTTGGC-CG--GAGGCGGTGTGAAG 10826 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582 ||| || || || |||| ||||||| |||| || |||||||||| | ||| | Sbjct 10827 CGTATCAGCGGGCTGATCTACGAAGAGACACGTGGAGTCCTGAAGATCTTTTTGGAGAAC 10886 Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 || || | |||||| || || || || |||||| || || || |||||| ||||| Sbjct 10887 GTCATTCGTGATGCCGTCACTTACACAGAACACGCTCGCCGCAAAACCGTCACCGCCATG 10946 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||| | || ||||| | || | |||||||||| | ||||||||||| |||| Sbjct 10947 GATGTTGTTTATGCTCTCAAGAGACAAGGCCGTACTCTCTATGGTTTTGGTGGTTA 11002 >seq16513 Length=14901 Score = 104 bits (114), Expect = 4e-18 Identities = 171/247 (69%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||||||||||||||| || |||||||| || || ||| | | || || | | || Sbjct 5125 CTTCGAGATAACATCCAGGGCATCACCAAACCGGCCATCAGGAGGCTCGCAAGGAGAGGG 5066 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || || | || || |||| || | || ||||||||||| Sbjct 5065 GGAGTGAAGAGAATCAGCGGGCTGATTTACGAGGAGACCCGCGGAGTGTTGAAGATCTTT 5006 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | |||||| | || || || |||||| | ||||||||| Sbjct 5005 TTGGAGAATGTGATTCGTGATGCCGTTACTTACACGGAACACGCTCGCAGGAAGACTGTC 4946 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| |||||||| |||| || || ||||| | || ||| | | | || ||||| ||| Sbjct 4945 ACCGCCATGGATGTCGTTTACGCCTTGAAGAGGCAGGGCAGGACTTTGTACGGTTTCGGA 4886 Query 16694 AGTTAAT 16700 |||||| Sbjct 4885 GGTTAAT 4879 >seq7714 Length=11656 Score = 86.0 bits (94), Expect = 1e-12 Identities = 166/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||||||||||||||| || |||||||| || || ||| | | || || | | || Sbjct 1545 CTTCGAGATAACATCCAGGGCATCACCAAACCGGCCATCAGGAGGCTCGCAAGGAGAGGG 1604 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || || | || || |||| || | || |||||||| || Sbjct 1605 GGAGTGAAGAGAATCAGCGGGCTGATTTACGAGGAGACCCGCGGAGTGTTGAAGATATTT 1664 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || |||| |||||| | || || || |||||| | ||||| ||| Sbjct 1665 TTGGAGAATGTGATCCGTGATGCCGTTACTTACACGGAACACGCTCGTAGGAAGACCGTC 1724 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||||| || || | || ||| | | | ||||||||||| Sbjct 1725 ACTGCTATGGATGTTGTTTATGCTTTAAAGAGACAGGGCAGGACTTTGTATGGTTTTGGT 1784 Query 16694 AGTTA 16698 |||| Sbjct 1785 GGTTA 1789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056845286975