Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq20014 592 5e-165 seq2978 499 9e-137 seq2990 399 6e-107 >seq20014 Length=5322 Score = 592 bits (656), Expect = 5e-165 Identities = 726/986 (74%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| ||||| ||||| | || |||||||| || | Sbjct 1920 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTG 1861 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| ||||||| || || || || Sbjct 1860 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 1801 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 1800 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1741 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || ||||| |||| ||||| || || Sbjct 1740 ATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATA 1681 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | || | ||||| ||||||||||| || ||||| ||| |||| |||| Sbjct 1680 TGGGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTT 1621 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 1620 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1561 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| |||| ||||| || |||||| |||| || | |||| || |||| Sbjct 1560 CTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 1501 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | |||||| |||| ||||| || ||| ||||||||||||||| || || Sbjct 1500 GT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 1442 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 ||||||||||| ||||| ||| | |||||||| || || ||||| ||||||||||| || Sbjct 1441 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1382 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||||| || || ||||| |||||||| || || || || ||||||||| || Sbjct 1381 ATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 1322 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 |||||| || || | |||| |||||| || || ||| ||| ||| | || Sbjct 1321 TTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGG 1262 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||| ||||| ||||| || |||||||| || || || ||||| || ||||| Sbjct 1261 TTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGG 1202 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| || |||||||||||||||||||| || || Sbjct 1201 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGC 1142 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 | ||| || || || || || ||| | || | | || ||| |||||||||||||||| Sbjct 1141 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAA 1082 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 ||| |||||||| || || ||||| |||||||||||| ||||| || |||| | Sbjct 1081 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-GGCCGTGTAATTAACA 1023 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | |||||||| || | ||||||||||| || || |||| Sbjct 1022 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 963 Query 20248 CTCATAACTTCCCACTTGATTTAGCT 20273 |||| || ||||| || || |||||| Sbjct 962 CTCACAATTTCCCTCTAGACTTAGCT 937 >seq2978 Length=1535 Score = 499 bits (552), Expect = 9e-137 Identities = 664/904 (73%), Gaps = 15/904 (2%) Strand=Plus/Plus Query 19383 TTTATACTCGCCTTTATCGCAG-CACCGCCTGTAGATATAGAT-GGCAT-ACGTGAGCC- 19438 ||||| ||||||| || || | | || || |||||||| ||| || || |||||| || Sbjct 11 TTTATTATCGCCTTCATTGCTGACTCCTCCAGTAGATATTGATAGGTATTACGTGAACCT 70 Query 19439 AGTTT--CCGGCTCG-TTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAG 19495 ||||| | || || ||| | | | |||||||||||||| || || | |||| | Sbjct 71 AGTTTTACTGGATCTCTTACTTTTATGGAACAATATTATTTCGGGTGCCATTATTCCTAC 130 Query 19496 CTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGA-TGAG 19553 || || ||||| |||| ||||| || || ||||||| | ||| || | || ||| Sbjct 131 TTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGGCAGCATCTGTTGAATGAA 190 Query 19554 TGGTTATACAAC-GGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGC 19612 ||||||||||| || ||||| ||| |||| |||| | ||||||||| | || ||||| Sbjct 191 TGGTTATACAATAGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGC 250 Query 19613 AGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATT 19672 ||| ||| | |||||||||| || | | | || ||| |||| ||||| Sbjct 251 TTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGC 310 Query 19673 CGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTG 19731 || |||||| |||| || | |||| || |||||| ||||| | | |||||| ||| Sbjct 311 TGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGT-TTTCTTGATCTACCCAATTG 369 Query 19732 GGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGT 19791 | ||||| || ||| ||||||||||||||| || || ||||||||||| ||||| ||| Sbjct 370 GTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGA 429 Query 19792 TCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTG 19851 | |||||||| || || ||||| ||||||||||| || || |||||||| || || |||| Sbjct 430 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTG 489 Query 19852 GCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCA 19911 | |||||||| || || || || ||||||||| || |||||| || || | | Sbjct 490 GTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGA 549 Query 19912 TCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAG 19971 ||| |||||| || || ||| ||| ||| | || || | ||||| ||||| |||| Sbjct 550 TCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAG 609 Query 19972 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTT 20031 | || |||||||| || || || ||||| || ||||| ||||||| || ||||||||| Sbjct 610 AAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 669 Query 20032 CTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATAT 20091 |||||| || |||||||||||||||||||| || ||| ||| || || || || || | Sbjct 670 GTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCT 729 Query 20092 GGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACC 20151 || | || | | || ||| ||||||||||||||||||| |||||||| || || |||| Sbjct 730 GGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 789 Query 20152 AGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGA 20210 | |||||||||||| ||||| || |||| || ||||||||| | | || | Sbjct 790 AATCAGTAGTTGATAGTCAA-GGCCGTGTAATTAACACTTGGGCTGATATCATTAACCGT 848 Query 20211 GCTAACCTCGGATTTGAAGTTATGC-ACGAGCGCAATGCTCATAACTTCCCACTTGATTT 20269 |||||||| || | |||||||||| | || || |||||||| || ||||| || || || Sbjct 849 GCTAACCTTGGTATGGAAGTTATGCAATGAACGTAATGCTCACAATTTCCCTCTAGACTT 908 Query 20270 AGCT 20273 |||| Sbjct 909 AGCT 912 >seq2990 Length=15620 Score = 399 bits (442), Expect = 6e-107 Identities = 572/792 (72%), Gaps = 14/792 (2%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| ||||| ||||| | || |||||||| || | Sbjct 14830 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTG 14889 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| ||||||| || || || || Sbjct 14890 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 14949 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 14950 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 15009 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || ||||| |||| ||||| || || Sbjct 15010 ATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATA 15069 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | || | ||||| ||||||||||| || ||||| ||| |||| |||| Sbjct 15070 TGGGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTT 15129 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGG-AACTATCTTACAG 19648 | ||||||||| | || ||||| ||| ||| | |||||| |||| || | | Sbjct 15130 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGGAACTTAGTTTCCG 15189 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| |||| ||||| || |||||| |||| || | |||| || ||| Sbjct 15190 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGC 15249 Query 19709 TGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 ||| ||||| | | |||||| |||| ||||| || ||| ||||||||||||||| || | Sbjct 15250 TGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 15308 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 | ||||||||||| ||||| ||| | |||||||| || || ||||| ||||||||||| | Sbjct 15309 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 15368 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | || |||||||| || || ||||| |||||||| || || || || ||||||||| | Sbjct 15369 CATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 15428 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | |||||| || || | |||| |||||| || || ||| ||| ||| | | Sbjct 15429 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAG 15488 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCAC-ACGG-GTACTT 20005 | || | ||||| ||||| ||||| || |||||||| || || || | |||| || || Sbjct 15489 GTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCTACGGTTTATTT 15548 Query 20006 TGGGAG-ATTGATATTT---CAATATG-CTT--CTTTCAATAATTC-TCGTTCTTTAC-A 20056 ||| | |||||| || |||||| ||| || ||| || || ||||||||||| | Sbjct 15549 TGGCCGTATTGATTCTTACCTAATATGTCTTAGTTTACAACAACTCTTCGTTCTTTACTA 15608 Query 20057 TTTCTTTCTTGC 20068 |||||| || || Sbjct 15609 TTTCTTCCTAGC 15620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144407166476700