Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq20014 527 1e-144 seq2978 448 8e-121 seq2990 338 1e-87 seq13754 134 2e-26 seq362 134 2e-26 seq18988 89.7 8e-13 >seq20014 Length=5322 Score = 527 bits (584), Expect = 1e-144 Identities = 711/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 ||||| ||||| |||| | || | || ||| | | || |||| |||||||| ||| | Sbjct 1920 TTCTGTAACTGGATAACCAGCACCGAA-AACCGTCTTTACATTGGATGGTTTGGCGTTTT 1862 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || ||||| || || | Sbjct 1861 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTC 1803 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || |||||||| || |||| || | | ||||| |||| Sbjct 1802 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1743 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || || || ||||| || |||| |||| || || ||||| || || || || | Sbjct 1742 ATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAA 1683 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 | |||||||||||| || ||||||| ||| | ||||||||||||||||| | | | Sbjct 1682 TATGGGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 1623 Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 | | |||||| | | || | | |||||||| | ||||||||||| | || Sbjct 1622 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1563 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || | |||||||| |||||||| |||||| |||||||| ||||| |||| || | Sbjct 1562 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 1503 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| | | |||||| | ||||| || || || || ||||||||| |||| | Sbjct 1502 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 1443 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 | || || || |||||||||||| | |||||||| || || || |||||||||||||||| Sbjct 1442 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1383 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 |||| || ||| ||| || || ||| | ||||| || | |||| ||||||||| | Sbjct 1382 CATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 1323 Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227 ||||| | || || ||| | ||| | |||||||| | || || ||| | | Sbjct 1322 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAG 1263 Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287 |||||| ||||| ||||||||||| || ||||| ||||| || || || || || || | Sbjct 1262 GTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCACGGTTATTTTG 1203 Query 212288 GTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCG 212347 | || | |||||||| ||||| ||||||||| | |||||| |||||||| | Sbjct 1202 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 1143 Query 212348 CATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 212407 | | |||||||| | || | ||||| || || | |||||| |||| ||||| |||| Sbjct 1142 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCA 1083 Query 212408 ACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTA 212467 |||||||||| ||||| |||||||||||||| |||||| ||| || || | Sbjct 1082 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACA 1023 Query 212468 CTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATG 212527 |||||| |||| | ||||| | || ||||||||||||||||||||||| ||| | |||| Sbjct 1022 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 963 Query 212528 CACACAACTTCCCACTTGACTTAGC 212552 | ||||| ||||| || |||||||| Sbjct 962 CTCACAATTTCCCTCTAGACTTAGC 938 >seq2978 Length=1535 Score = 448 bits (496), Expect = 8e-121 Identities = 648/902 (72%), Gaps = 13/902 (1%) Strand=Plus/Plus Query 211663 TTTATCGTAGCATTCATCGCAG-CACCTCCCGTTGATATCGACGG--AATCCGTGAACC- 211718 ||||| | || ||||| || | | ||||| || ||||| || | | | |||||||| Sbjct 11 TTTATTATCGCCTTCATTGCTGACTCCTCCAGTAGATATTGATAGGTATTACGTGAACCT 70 Query 211719 AGTAG--CTGGTTCATTCA--TGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCAT 211774 ||| |||| || | | | ||||| ||||| || || || ||||| || |||| Sbjct 71 AGTTTTACTGGATCTCTTACTTTTATGG-AACAATATTATTTCGGGTGCCATTATTCCTA 129 Query 211775 CTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAAG-CAGCAACTCTTGA-TGA 211832 |||| || || ||||| || || || || || ||||||| ||||| || |||| ||| Sbjct 130 CTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGGCAGCATCTGTTGAATGA 189 Query 211833 GTGGCTCTACAAT-GGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCT 211891 ||| | |||||| ||||||||||| | | | | | |||||| | | || | Sbjct 190 ATGGTTATACAATAGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAG 249 Query 211892 CAGCATACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCT 211951 | |||||||| | ||||||||||| | |||| | |||||||| |||||||| Sbjct 250 CTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTG 309 Query 211952 GTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCG 212011 |||||| |||||||| ||||| |||| || ||||| ||| | | |||||| | | Sbjct 310 CTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTG 369 Query 212012 GTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGT 212071 |||| || || || || ||||||||| |||| || || || || |||||||||||| Sbjct 370 GTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGA 429 Query 212072 TCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAG 212131 | |||||||| || || || |||||||||||||||||||| || ||| ||| || || | Sbjct 430 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTG 489 Query 212132 GTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTA 212191 || | ||||| || | |||| ||||||||| |||||| | || || ||| | | Sbjct 490 GTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGA 549 Query 212192 TCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 212251 || | |||||||| | || || ||| | ||||||| ||||| |||||||||| Sbjct 550 TCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAG 609 Query 212252 AGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCAT 212311 | || ||||| ||||| || || || || || || || || | |||||||| ||||| Sbjct 610 AAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 669 Query 212312 CATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTAT 212371 ||||||||| | |||||| |||||||| || | |||||||| | || | | Sbjct 670 GTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCT 729 Query 212372 GGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACC 212431 |||| || || | |||||| |||| ||||| |||||||||||||| ||||| ||||||| Sbjct 730 GGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 789 Query 212432 AATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAG 212491 ||||||| |||||| ||| || || ||||||| |||| | ||||| | | Sbjct 790 AATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAACCGTG 849 Query 212492 CAAACCTTGGTATGGAAGTTATGC-ACGAAAGAAATGCACACAACTTCCCACTTGACTTA 212550 | |||||||||||||||||||||| | ||| | ||||| ||||| ||||| || |||||| Sbjct 850 CTAACCTTGGTATGGAAGTTATGCAATGAACGTAATGCTCACAATTTCCCTCTAGACTTA 909 Query 212551 GC 212552 || Sbjct 910 GC 911 >seq2990 Length=15620 Score = 338 bits (374), Expect = 1e-87 Identities = 503/707 (71%), Gaps = 5/707 (1%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 ||||| ||||| |||| | || | || ||| | | || |||| |||||||| ||| | Sbjct 14830 TTCTGTAACTGGATAACCAGCACCGAA-AACCGTCTTTACATTGGATGGTTTGGCGTTTT 14888 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || ||||| || || | Sbjct 14889 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTC 14947 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || |||||||| || |||| || | | ||||| |||| Sbjct 14948 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 15007 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || || || ||||| || |||| |||| || || ||||| || || || || | Sbjct 15008 ATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAA 15067 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 | |||||||||||| || ||||||| ||| | ||||||||||||||||| | | | Sbjct 15068 TATGGGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 15127 Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGG-AACTTTCATAC 211926 | | |||||| | | || | | |||||||| | |||||| ||||| | | Sbjct 15128 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGGAACTTAGTTTC 15187 Query 211927 CGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTC 211986 ||| | |||||||| |||||||| |||||| |||||||| ||||| |||| || Sbjct 15188 CGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACT 15247 Query 211987 GCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGT 212046 ||||| ||| | | |||||| | ||||| || || || || ||||||||| |||| Sbjct 15248 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 15307 Query 212047 ATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCAC 212106 || || || || |||||||||||| | |||||||| || || || ||||||||||||||| Sbjct 15308 ATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 15367 Query 212107 CCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCAC 212166 ||||| || ||| ||| || || ||| | ||||| || | |||| ||||||||| Sbjct 15368 CCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 15427 Query 212167 GGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTAT 212226 |||||| | || || ||| | ||| | |||||||| | || || ||| | Sbjct 15428 GGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAA 15487 Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGC 212273 ||||||| ||||| ||||||||||| || ||||| ||||| || || Sbjct 15488 GGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGC 15534 >seq13754 Length=52894 Score = 134 bits (148), Expect = 2e-26 Identities = 248/359 (69%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 194584 AAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACC 194643 ||||| | ||||| |||||||||| || || ||||| || || || |||| || Sbjct 22927 AAACCCCAATATGTCATTCTTGCTGCAGCCAAAGTAGGCGGGATCTATGCTAACAGCACT 22868 Query 194644 TATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGCA 194703 || ||||| || || ||| | || || ||| || |||||||| ||||| || | Sbjct 22867 TACCCTGCAGACTTTATCACCGTTAACCTTCAGATACAAACAAATGTCATTGACTCTTCC 22808 Query 194704 TATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTTT 194763 |||||| |||| || |||||||| | ||||||||||| |||||||| |||||||| | Sbjct 22807 TATCGTTATGGTGTCAAGAAACTTATATTTCTAGGTTCTTCTTGCATTTATCCTAAACAT 22748 Query 194764 CCAAAGATACCTATTACAGAGGATCAGTTACTT--GCTAGTCCTTTGGAAGAATCTAAT- 194820 || |||||| | || ||| | | || | |||| || || | | ||| Sbjct 22747 GCACCCCAACCTATACCCGA--ATCTGCTCTTTTAACGGGTCCGTTAGAGCCAACCAATG 22690 Query 194821 AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCAGCAG 194880 |||| ||||| |||| || || || ||||| | |||||| ||||| ||| | || Sbjct 22689 AGTG-GTATGCCGTTGCCAAAATTGCTGGTATCAAGATGTGCCAAGCTTATAGGATCCAA 22631 Query 194881 TATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAATTT 194939 || | ||||||| ||| ||||||||| ||| | || || |||||||| ||||| Sbjct 22630 TACAAGTGGGATGCAATTTCAGCAATGCCTACAAATTTGTATGGTCCTAATGACAATTT 22572 >seq362 Length=11371 Score = 134 bits (148), Expect = 2e-26 Identities = 248/359 (69%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 194584 AAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACC 194643 ||||| | ||||| |||||||||| || || ||||| || || || |||| || Sbjct 9087 AAACCCCAATATGTCATTCTTGCTGCAGCCAAAGTAGGCGGGATCTATGCTAACAGCACT 9028 Query 194644 TATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGCA 194703 || ||||| || || ||| | || || ||| || |||||||| ||||| || | Sbjct 9027 TACCCTGCAGACTTTATCACCGTTAACCTTCAGATACAAACAAATGTCATTGACTCTTCC 8968 Query 194704 TATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTTT 194763 |||||| |||| || |||||||| | ||||||||||| |||||||| |||||||| | Sbjct 8967 TATCGTTATGGTGTCAAGAAACTTATATTTCTAGGTTCTTCTTGCATTTATCCTAAACAT 8908 Query 194764 CCAAAGATACCTATTACAGAGGATCAGTTACTT--GCTAGTCCTTTGGAAGAATCTAAT- 194820 || |||||| | || ||| | | || | |||| || || | | ||| Sbjct 8907 GCACCCCAACCTATACCCGA--ATCTGCTCTTTTAACGGGTCCGTTAGAGCCAACCAATG 8850 Query 194821 AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCAGCAG 194880 |||| ||||| |||| || || || ||||| | |||||| ||||| ||| | || Sbjct 8849 AGTG-GTATGCCGTTGCCAAAATTGCTGGTATCAAGATGTGCCAAGCTTATAGGATCCAA 8791 Query 194881 TATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAATTT 194939 || | ||||||| ||| ||||||||| ||| | || || |||||||| ||||| Sbjct 8790 TACAAGTGGGATGCAATTTCAGCAATGCCTACAAATTTGTATGGTCCTAATGACAATTT 8732 >seq18988 Length=14164 Score = 89.7 bits (98), Expect = 8e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 212469 TTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGC 212528 ||||| |||| | ||||| | || ||||||||||||||||||||||| ||| | ||||| Sbjct 7908 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 7967 Query 212529 ACACAACTTCCCACTTGACTTAGC 212552 ||||| ||||| || |||||||| Sbjct 7968 TCACAATTTCCCTCTAGACTTAGC 7991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807352554117000