Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq945 143 3e-29 seq3314 96.9 4e-15 >seq945 Length=6199 Score = 143 bits (158), Expect = 3e-29 Identities = 370/561 (66%), Gaps = 9/561 (2%) Strand=Plus/Minus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 |||||| || ||||| ||||||||||| || || || ||| || || || ||||| || Sbjct 2221 CAAACACGCGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGT 2162 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAA 21590 |||||| |||||||| || | ||||| |||||||| || | |||||| || || |||| Sbjct 2161 TAAACCCGGCATTAACCCACGTTTTTTCAACCAAAAAATCG-CGCAAAAACTCCCCGAAA 2103 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAAT-CGTTCACCGTATGTAGATTCTTTA 21649 | || || || || ||| |||||| || | |||| ||||| || | || ||| | Sbjct 2102 AAAATATCCCTTCGACGCAAGCAAACGCGA-TAATCCGTTCTGCGAA---AGTTTC-GGA 2048 Query 21650 TCCA-ATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAAT 21708 |||| |||||||| ||||| || || |||| | || |||| ||| || ||||| Sbjct 2047 TCCATCAATCCATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAAT 1988 Query 21709 AGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACT 21768 ||| || | | |||||||||| ||| | || ||| Sbjct 1987 AGCCCGAAATAACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACT 1928 Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||||||||| ||||| || ||||| || || ||||||||||| | ||||| Sbjct 1927 ATACATTTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCACGCGCCTC 1868 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 | ||| || || ||| || ||| | |||||| || || || || Sbjct 1867 GGCGACTTGGACTTCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTGA 1808 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 ||||| ||||| || | | | | || || | |||||| || ||||| | Sbjct 1807 CGCGGCGAAAAAAGCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAGGCGTC 1748 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGC 22008 ||| | | ||||| |||||||| |||||||| | |||||||| || || Sbjct 1747 CCAGTGACGTTGATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCGGC 1688 Query 22009 CTTTTTATACATAATCCAGAT 22029 ||||||||||| |||||| Sbjct 1687 TTTTTTATACATTTCCCAGAT 1667 >seq3314 Length=31422 Score = 96.9 bits (106), Expect = 4e-15 Identities = 280/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 || ||||| || | ||||| || ||||||||||| ||||| ||| || || || || Sbjct 22108 TTCTGATACTCCCCGACTCTCTTCTCGAAAAAATTAGTCTTCCCTCGTAACGAAATCAAT 22167 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| ||||||| ||||| | || | | ||||| ||| |||| |||| || Sbjct 22168 TCCATCCAATCAAACGGATTCTGAGTACCATACATTTTGCCACATCCCAATTCTCCCAAC 22227 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 |||||||| |||||||| || || ||||||| ||| | ||| ||||| || | ||| Sbjct 22228 AATCTATCCGCTACAAACTCAATGTATTGACTCATAAGACCACCGTTCATTCC-AACAAG 22286 Query 21365 TTTAC-AGGAAGAGCTTTTGTCAAAAAAGATTTTTCT--ATAGAGACGGCTTCAACAATT 21421 | ||| | || | |||| || | | ||| || || || ||| || Sbjct 22287 CGCGCAAGGTAACGC--GTCGCAAACAAACTCTCTCTCGATCTCAACTGCATCAGAAACG 22344 Query 21422 ATATTTATTA-TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGC 21480 || | ||| ||| | ||| | | || | ||| | | || ||| || Sbjct 22345 ATGCCTTTTACGCCTTCTTCCGTTAGTTTG-TTGTTTAGTAATTTGTATAGCAGACACGC 22403 Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGG 21540 ||| || ||||| | |||| || | || ||||| || || ||||||| || || Sbjct 22404 AAAGTCGCAATGTAGTCCTTTGTCTCGTGAGATCAATTCGTTTGAGAATGTTAGGCCTGG 22463 Query 21541 CATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAAAGAAAATGC 21599 ||| ||||| | |||||||||||||||||| | |||||| || ||||||||| || || | Sbjct 22464 CATCAATCCGCGCTTTTTTAACCAAAATATCG-CGCAAAAGCTTCCTGAAAAAAATATCC 22522 Query 21600 C 21600 | Sbjct 22523 C 22523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531767326143000