Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq13411 120 3e-22 seq5340 120 3e-22 seq13106 104 2e-17 seq8473 104 2e-17 seq16550 84.2 2e-11 >seq13411 Length=19963 Score = 120 bits (132), Expect = 3e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||||||| | || |||||||| ||||| || ||| | || ||| | ||| | ||||| Sbjct 11258 CAAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATC 11317 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||| ||||| | || ||| |||||| ||||||||||| || || || || Sbjct 11318 CTCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGA 11377 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACT 26943 |||||| | | || | | ||||||||||| ||||| | || || | || ||||| Sbjct 11378 CCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAG-GACATTAGCCGACT 11436 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTC 26978 | || || ||||||||||| ||| | ||| ||||| Sbjct 11437 ACAATATCCAAAAAGAATCCACTCTTCATTTGGTC 11471 >seq5340 Length=22833 Score = 120 bits (132), Expect = 3e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||||||| | || |||||||| ||||| || ||| | || ||| | ||| | ||||| Sbjct 14493 CAAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATC 14434 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||| ||||| | || ||| |||||| ||||||||||| || || || || Sbjct 14433 CTCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGA 14374 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACT 26943 |||||| | | || | | ||||||||||| ||||| | || | | | ||| |||| Sbjct 14373 CCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGA-CATTAGCCGACT 14315 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTC 26978 | || || ||||||||||| ||| | ||| ||||| Sbjct 14314 ACAATATCCAAAAAGAATCCACTCTTCATTTGGTC 14280 >seq13106 Length=76417 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||| ||| | || | || || Sbjct 56125 AACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCT 56184 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || || ||||| Sbjct 56185 TCCGACACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGAC 56244 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | ||||| | || |||||| || |||||||| | | | | || |||||| Sbjct 56245 CAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCGCCGACTAC 56304 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| ||||||| ||||| Sbjct 56305 AACATCCAGAAGGAGTCCACTCTCCATCTCGTCCT 56339 >seq8473 Length=8692 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||| ||| | || | || || Sbjct 5583 AACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCT 5524 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || || ||||| Sbjct 5523 TCCGACACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGAC 5464 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | ||||| | || |||||| || |||||||| | | | | || |||||| Sbjct 5463 CAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCGCCGACTAC 5404 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| ||||||| ||||| Sbjct 5403 AACATCCAGAAGGAGTCCACTCTCCATCTCGTCCT 5369 >seq16550 Length=20979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 ||||| | ||||| ||||| || |||||||| | ||||| | ||| | || | | | Sbjct 17902 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACAATCACTTTGGAAGTCGAGAGCTCA 17843 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || |||||||| | ||||| || || || || || ||||| || || ||||| Sbjct 17842 -GATACCATCGATAATGTCAAGGCCAAAATCCAAGATAAGGAGGGGATCCCACCAGATCA 17784 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 || || || || | | || ||||| || ||||||| || | ||| || || |||| Sbjct 17783 GCAGAGGCTTATCTTTGCAGGTAAACAGCTTGAAGATGGCAGGA-CGTTGGCAGATTATA 17725 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAG 26983 ||||||| || || ||||| ||||||| || ||||| Sbjct 17724 ACATTCAGAAGGAGTCTACACTCCATCTTGTGCTGAG 17688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478542285654000