Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq945 132 1e-25 seq14165 91.5 4e-13 seq12066 91.5 4e-13 seq4091 91.5 4e-13 >seq945 Length=6199 Score = 132 bits (146), Expect = 1e-25 Identities = 361/544 (66%), Gaps = 13/544 (2%) Strand=Plus/Plus Query 22402 TTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAA 22461 ||||| || || ||| || |||| | || |||| || || | ||||| ||||| Sbjct 1976 TTATTTCGGGCTATTGAAACGATTCCTTGTGTTGAGAAAAAAGCCAACTGGGCTTTGAAA 2035 Query 22462 TGGAT-GAACAAT--GAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAA 22518 ||||| || || ||| || |||| ||||| |||| || |||||| || ||| Sbjct 2036 TGGATTGATGGATCCGAAACTT---TCGCAGAACGGATTATCGCGTTTGCTTGCGTCGAA 2092 Query 22519 GGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATG 22578 || || || ||||| || ||||| || || |||||| | |||||||||| | ||| Sbjct 2093 GGGATATTTTTTTCGGGGAGTTTTTGCGCGATTTTTTGGTTGAAAAAACGTGGGTTAATG 2152 Query 22579 CCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTT 22638 |||||| ||||||||||||| ||||| || |||| |||||| | ||| |||||| Sbjct 2153 CCGGGTTTAACGTTTTCAAACGAGTTGATATCGAGAGACGAGGGTTTGCATTGCGATTTC 2212 Query 22639 GCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCAT-ATGAAACTGTACTTGA 22697 |||||| || |||| | | | | | || || || | | ||| ||| | Sbjct 2213 GCGTGTTTGTTATA-CAGTTTGTTGAAA---ATGAAGTTGAGTGAGGAACGCGTAAAAGG 2268 Query 22698 TATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAG 22757 ||||| || | || || | | ||| | || ||||||||||||| || || | Sbjct 2269 GATTATCGCAGACGCTGTAAACATCGAAAGGGAGTTCGTTTGCGAGGCGTTGCC-GTGTG 2327 Query 22758 -TCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTC 22816 | | |||| || |||| || | |||||| |||||| | | ||| || ||| | Sbjct 2328 CTTTGGTTGGGATGAATGGGGATTTGATGAGTGTTTATATTGAGTATGTCGCGGATAGGT 2387 Query 22817 TATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGG 22876 | || | | |||||| |||| ||||| || ||||| ||||| ||||||| Sbjct 2388 TGTTGGGGGCGTTGGGTTATTCAAAAATGTATAATGTGCAGAATCCGTTTGATTGGATGG 2447 Query 22877 AACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAA 22936 | | || || | | || ||||| ||||| || || ||||| ||||| || || || | Sbjct 2448 AGTTGATCTCGTTGCAGGGGAAGACTAATTTTTTTGAGAAAAGGGTTGGGGAGTATCAGA 2507 Query 22937 AAGC 22940 |||| Sbjct 2508 AAGC 2511 >seq14165 Length=56756 Score = 91.5 bits (100), Expect = 4e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| || || || | |||||| | ||| | |||||| ||||| | Sbjct 34623 ATGAAAGAAGATAGCATTGAAGGCATATATGACACGTTAAAGGAATGTGCTGTTATTAGC 34564 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||||| ||||||||||| || || || ||| | ||||| || | | || ||||| Sbjct 34563 AAATCAGCAGGAGGAATTGGTGTTTCTATTCATAATATCCGTGCAACTGGA-AGCTACAT 34505 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || || ||| || ||||| | || || ||||| ||||||||| | |||| Sbjct 34504 ACGTGGAACGAATGGAACATCCAATGGCATTGTGCCAATGCTGCGTGTGTTTAATGATAC 34445 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || || || || || || ||| | || || Sbjct 34444 TGCCCGATATGTTGATCAAGGAGGTGGCAAGAGGAAGGG 34406 >seq12066 Length=12680 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | | || | | || || |||||||||||||||||||| ||||| Sbjct 6534 CAGTTTTATGTAAATCAAGGAGAGTTATCCTGTCAAATGTATCAGCGATCTGCAGATATG 6475 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAt 111821 ||||| || ||||| ||||| || ||| || || || || |||||| | || |||||| Sbjct 6474 GGTCTGGGCGTTCCATTTAACATCGCATCATATGCGCTGCTGACTTGCATGATTGCTCAT 6415 Query 111822 ttt 111824 || Sbjct 6414 GTT 6412 >seq4091 Length=20028 Score = 91.5 bits (100), Expect = 4e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| || || || | |||||| | ||| | |||||| ||||| | Sbjct 16339 ATGAAAGAAGATAGCATTGAAGGCATATATGACACGTTAAAGGAATGTGCTGTTATTAGC 16280 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||||| ||||||||||| || || || ||| | ||||| || | | || ||||| Sbjct 16279 AAATCAGCAGGAGGAATTGGTGTTTCTATTCATAATATCCGTGCAACTGGA-AGCTACAT 16221 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || || ||| || ||||| | || || ||||| ||||||||| | |||| Sbjct 16220 ACGTGGAACGAATGGAACATCCAATGGCATTGTGCCAATGCTGCGTGTGTTTAATGATAC 16161 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || || || || || || ||| | || || Sbjct 16160 TGCCCGATATGTTGATCAAGGAGGTGGCAAGAGGAAGGG 16122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303018363198650