Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq13411 120 3e-22 seq5340 120 3e-22 seq16550 98.7 9e-16 seq13106 91.5 1e-13 seq8473 91.5 1e-13 seq16006 89.7 4e-13 seq8384 89.7 4e-13 seq7910 89.7 4e-13 seq4675 89.7 4e-13 seq4586 86.0 5e-12 >seq13411 Length=19963 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || |||||||| ||||| || ||| | || ||| | |||||||| | Sbjct 11258 CAAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATC 11317 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||| ||||| | || ||| |||||| |||||||||||||| || || || Sbjct 11318 CTCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGA 11377 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATT 24165 ||||| | | || | | ||||| ||||| ||||| | ||| || | || ||| | Sbjct 11378 CCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAG-GACATTAGCCGACT 11436 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 | || || ||||||||||| || ||||||| || ||| Sbjct 11437 ACAATATCCAAAAAGAATCCACTCTTCATTTGGTCTTA 11474 >seq5340 Length=22833 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || |||||||| ||||| || ||| | || ||| | |||||||| | Sbjct 14493 CAAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATC 14434 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||| ||||| | || ||| |||||| |||||||||||||| || || || Sbjct 14433 CTCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGA 14374 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATT 24165 ||||| | | || | | ||||| ||||| ||||| | ||| | | | ||| || | Sbjct 14373 CCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGA-CATTAGCCGACT 14315 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 | || || ||||||||||| || ||||||| || ||| Sbjct 14314 ACAATATCCAAAAAGAATCCACTCTTCATTTGGTCTTA 14277 >seq16550 Length=20979 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || |||||||| | || || | ||||||||| | Sbjct 17902 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACAATCACTTTGGAAGTCGAGAGCTCA 17843 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| || || || || || || || || || ||||| Sbjct 17842 GATACCATCGATAATGTCAAGGCCAAAATCCAAGATAAGGAGGGGATCCCACCAGATCAG 17783 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || || || || ||||||| ||| | ||| || |||||||| Sbjct 17782 CAGAGGCTTATCTTTGCAGGTAAACAGCTTGAAGATGGCAGGA-CGTTGGCAGATTATAA 17724 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| || || |||||| | ||| | ||| | || ||||| || || Sbjct 17723 CATTCAGAAGGAGTCTACACTCCATCTTGTGCTGAGGTTGAGGGGTGG 17676 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || ||||| | ||||| | || ||||| | Sbjct 18358 ATGCAGATCTTTGTCAAGACGTTGACAGGAAAGACCATTACTTTGGAGGTCGAAAGCTCA 18299 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || |||||| || || ||||| || || || || || Sbjct 18298 GACACAATCGATAATGTTAAGGCGAAGATTCAAGATAAGGAAGGGATCCCACCAGACCAG 18239 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| | |||||||||||||| |||| ||| | | | ||||||||| Sbjct 18238 CAGAGATTGATTTTTGCTGGCAAGCAACTCGAGGATGGCAGGACCTTGGCAGATTATAAC 18179 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 18178 ATCCAGAAGGAATCAAC 18162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | || || || | || || ||||||||||| | Sbjct 18588 AATATGCAGATCTTTGTTAAGACTCTCACGGGTAAGACCATCACTCTCGAAGTCGAGAGC 18529 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| ||||| | || | | ||| || ||||||||||| || || || ||| Sbjct 18528 TCTGACACTATCGATAATGTAAGGCCAAA-ATCCAAGACAAAGAAGGTATCCCCCCAGAT 18470 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || || || |||| | | || ||||| ||||| |||| ||| | | | || || Sbjct 18469 CAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGCAGGACCCTGGCAGACTAC 18410 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || |||||||| ||||| || | ||| | ||||| || ||||| ||||| Sbjct 18409 AATATTCAAAAGGAATCAACCCTCCATCTTGTGTTGAGGTTGAGGGGAGG 18360 >seq13106 Length=76417 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || |||| ||| | || || ||| | Sbjct 56125 AACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCT 56184 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| || ||||| Sbjct 56185 TCCGACACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGAC 56244 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || || | || || | || ||||||||| |||||||| | | | | | || ||| || Sbjct 56245 CAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCGCCGACTAC 56304 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 56305 AACATCCAGAAGGAGTCCAC 56324 >seq8473 Length=8692 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || |||| ||| | || || ||| | Sbjct 5583 AACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCT 5524 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| || ||||| Sbjct 5523 TCCGACACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGAC 5464 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || || | || || | || ||||||||| |||||||| | | | | | || ||| || Sbjct 5463 CAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCGCCGACTAC 5404 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 5403 AACATCCAGAAGGAGTCCAC 5384 >seq16006 Length=16259 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || || || | || || | || ||||| | Sbjct 13035 ATGCAAATCTTCGTCAAGACTTTGACAGGGAAGACCATCACTTTGGAGGTCGAAAGCTCT 13094 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| || |||||||| || || || || || Sbjct 13095 GACACCATTGACAACGTCAAGGCAAAGATCCAAGATAAAGAAGGGATCCCGCCAGACCAG 13154 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| | |||||||||||||| |||| ||| | | | ||| || ||| Sbjct 13155 CAAAGGTTGATTTTTGCTGGCAAGCAACTCGAGGATGGCAGGACCCTGGCCGACTACAAC 13214 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || |||||||| || ||| | ||||| || Sbjct 13215 ATCCAAAAAGAGTCCACATTGCATTTGGT 13243 >seq8384 Length=24589 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || |||||| | || || | ||||||||| | Sbjct 3586 ATGCAGATCTTTGTTAAGACTCTCACAGGAAAAACCATCACTTTGGAAGTCGAGAGCTCT 3645 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||||||||| || || || || || Sbjct 3646 GACACAATCGATAACGTCAAGGCTAAGATCCAGGACAAAGAAGGTATCCCCCCAGACCAG 3705 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| || |||||||| || || |||| | | | | ||||| ||| Sbjct 3706 CAGAGGTTGATTTTCGCTGGCAAGCAGCTTGAGGATGGACGTACCCTTGCTGATTACAAC 3765 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || || || ||| | ||||| || Sbjct 3766 ATTCAGAAGGAGTCCACACTGCATTTGGT 3794 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| ||| | || || ||||||||||| | Sbjct 3355 AATATGCAGATCTTTGTTAAGACTCTTACTGGTAAAACCATCACTCTCGAAGTCGAGAGC 3414 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| ||||| | || || || || ||||||||||| || || || || Sbjct 3415 TCTGACACTATCGATAATGTTAAGGCGAAAATCCAAGACAAAGAAGGGATCCCCCCAGAC 3474 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| |||| | | || ||||| ||||| || | | | | | |||||| Sbjct 3475 CAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACCTTGGCCGATTAC 3534 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||| ||||| || | ||| | || | || ||||| || || Sbjct 3535 AACATTCAAAAGGAATCAACCCTCCATCTTGTTCTCAGGTTGAGGGGCGG 3584 >seq7910 Length=9655 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || |||||| | || || | ||||||||| | Sbjct 1822 ATGCAGATCTTTGTTAAGACTCTCACAGGAAAAACCATCACTTTGGAAGTCGAGAGCTCT 1881 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||||||||| || || || || || Sbjct 1882 GACACAATCGATAACGTCAAGGCTAAGATCCAGGACAAAGAAGGTATCCCCCCAGACCAG 1941 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| || |||||||| || || |||| | | | | ||||| ||| Sbjct 1942 CAGAGGTTGATTTTCGCTGGCAAGCAGCTTGAGGATGGACGTACCCTTGCTGATTACAAC 2001 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || || || ||| | ||||| || Sbjct 2002 ATTCAGAAGGAGTCCACACTGCATTTGGT 2030 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| ||| | || || ||||||||||| | Sbjct 1591 AATATGCAGATCTTTGTTAAGACTCTTACTGGTAAAACCATCACTCTCGAAGTCGAGAGC 1650 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| ||||| | || || || || ||||||||||| || || || || Sbjct 1651 TCTGACACTATCGATAATGTTAAGGCGAAAATCCAAGACAAAGAAGGGATCCCCCCAGAC 1710 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| |||| | | || ||||| ||||| || | | | | | |||||| Sbjct 1711 CAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACCTTGGCCGATTAC 1770 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||| ||||| || | ||| | || | || ||||| || || Sbjct 1771 AACATTCAAAAGGAATCAACCCTCCATCTTGTTCTCAGGTTGAGGGGCGG 1820 >seq4675 Length=16269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || |||||| | || || | ||||||||| | Sbjct 15973 ATGCAGATCTTTGTTAAGACTCTCACAGGAAAAACCATCACTTTGGAAGTCGAGAGCTCT 16032 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||||||||| || || || || || Sbjct 16033 GACACAATCGATAACGTCAAGGCTAAGATCCAGGACAAAGAAGGTATCCCCCCAGACCAG 16092 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| || |||||||| || || |||| | | | | ||||| ||| Sbjct 16093 CAGAGGTTGATTTTCGCTGGCAAGCAGCTTGAGGATGGACGTACCCTTGCTGATTACAAC 16152 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || || || ||| | ||||| || Sbjct 16153 ATTCAGAAGGAGTCCACACTGCATTTGGT 16181 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| ||| | || || ||||||||||| | Sbjct 15742 AATATGCAGATCTTTGTTAAGACTCTTACTGGTAAAACCATCACTCTCGAAGTCGAGAGC 15801 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| ||||| | || || || || ||||||||||| || || || || Sbjct 15802 TCTGACACTATCGATAATGTTAAGGCGAAAATCCAAGACAAAGAAGGGATCCCCCCAGAC 15861 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| |||| | | || ||||| ||||| || | | | | | |||||| Sbjct 15862 CAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACCTTGGCCGATTAC 15921 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||| ||||| || | ||| | || | || ||||| || || Sbjct 15922 AACATTCAAAAGGAATCAACCCTCCATCTTGTTCTCAGGTTGAGGGGCGG 15971 >seq4586 Length=18721 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || |||||||| | || || |||| || ||| | Sbjct 14107 ATGCAGATATTTGTGAAAACTTTGACTGGAAAGACCATCACTCTCGAGGTGGAGAGCTCT 14048 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || |||||| ||||||||||| || || || ||||| Sbjct 14047 GACACCATTGACAATGTTAAGGCCAAGATTCAAGACAAAGAAGGGATTCCCCCAGATCAG 13988 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| || || || || || | | | | | || || ||| Sbjct 13987 CAGAGGCTGATCTTTGCCGGGAAACAGCTTGAGGACGGTCGTACCCTTGCTGACTACAAC 13928 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || ||||| || |||| || ||| | | ||||| || || Sbjct 13927 ATTCAGAAGGAATCGACCCTTCACTTGGTGCTTCGTTTGAGGGGTGG 13881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429830810111625