Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq16550 96.9 3e-15 seq16006 84.2 2e-11 seq14670 84.2 2e-11 seq6802 84.2 2e-11 seq6637 84.2 2e-11 >seq16550 Length=20979 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| || ||||| || || |||||||| || ||||| || ||||| ||| | Sbjct 18588 AATATGCAGATCTTTGTTAAGACTCTCACGGGTAAGACCATCACTCTCGAAGTCGAGAGC 18529 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | | |||| | |||| | || |||||||| ||||| ||| Sbjct 18528 TCTGACACTATCGATAATGTAAGGCCAAAA-TCCAAGACAAAGAAGGTATCCCCCCAGAT 18470 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||| | || | ||| || || || | || |||| || ||| |||| || || Sbjct 18469 CAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGCAGGACCCTGGCAGACTAC 18410 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| || || || | ||| | |||||||| ||| | ||||| Sbjct 18409 AATATTCAAAAGGAATCAACCCTCCATCTTGTGTTGAGGTTGAGGGGAGG 18360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| || || |||| |||||||| || ||||| | ||| || ||||| | ||| Sbjct 17809 GATAAGGAGGGGATCCCACCAGATCAGCAGAGGCTTATCTTTGCAGGTAAACAGCTTGAA 17750 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || || |||| |||||||||||||| || |||||||| | ||| | ||| || Sbjct 17749 GATGGCAGGACGTTGGCAGATTATAACATTCAGAAGGAGTCTACACTCCATCTTGTGCTG 17690 Query 115499 AGATTGCGAGGAGG 115512 || ||| | || || Sbjct 17689 AGGTTGAGGGGTGG 17676 >seq16006 Length=16259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||||||||| |||| || |||||||| | |||| ||| ||||| ||| | || Sbjct 13128 GATAAAGAAGGGATCCCGCCAGACCAGCAAAGGTTGATTTTTGCTGGCAAGCAACTCGAG 13187 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGT 115494 |||| || ||| ||||||| || ||||| ||||||||||| || | ||| |||| Sbjct 13188 GATGGCAGGACCCTGGCCGACTACAACATCCAAAAAGAGTCCACATTGCATTTGGT 13243 >seq14670 Length=61898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 |||||| |||||| | || | ||| || |||||||||||||||| | ||| | || || Sbjct 32013 TGATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAAGATGGAAGAACACTTGCTGA 31954 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| || || ||||| || || || | ||| | || ||||||||| |||| |||| Sbjct 31953 TTACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTGAGATTGAGAGGTGGAA 31898 >seq6802 Length=18417 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 |||||| |||||| | || | ||| || |||||||||||||||| | ||| | || || Sbjct 11171 TGATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAAGATGGAAGAACACTTGCTGA 11230 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| || || ||||| || || || | ||| | || ||||||||| |||| |||| Sbjct 11231 TTACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTGAGATTGAGAGGTGGAA 11286 >seq6637 Length=15695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 |||||| |||||| | || | ||| || |||||||||||||||| | ||| | || || Sbjct 3883 TGATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAAGATGGAAGAACACTTGCTGA 3942 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| || || ||||| || || || | ||| | || ||||||||| |||| |||| Sbjct 3943 TTACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTGAGATTGAGAGGTGGAA 3998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425239933609000