Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq13411 104 2e-17 seq5340 104 2e-17 seq16006 93.3 3e-14 seq6710 93.3 3e-14 seq8384 84.2 2e-11 seq7910 84.2 2e-11 seq4675 84.2 2e-11 >seq13411 Length=19963 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| ||| || ||||| || ||||| || ||||||||||| | || || |||| || Sbjct 11470 ACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCTAATGTCCTGCCGTCTTCA 11411 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846 | ||||||||| ||| | || | || |||||||| || | ||| |||||||| | Sbjct 11410 AGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCTTGA 11351 Query 16847 ATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 || | ||| ||||| | | | | |||||| || || ||| | ||| || |||| Sbjct 11350 ATCTTGGCT--TTCACATTGTCGATTGTGTCGGAGGATTCGACTTCTAAGGTTATTGTTT 11293 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | ||||| | ||||| || || |||||||||||| Sbjct 11292 TGCCGGTTAAGGTTTTTACGAAGATCTGCATTTTG 11258 >seq5340 Length=22833 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| ||| || ||||| || ||||| || ||||||||||| | || || |||| || Sbjct 14281 ACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCTAATGTCCTGCCGTCTTCA 14340 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846 | ||||||||| ||| | || | || |||||||| || | ||| |||||||| | Sbjct 14341 AGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCTTGA 14400 Query 16847 A--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 | || ||| ||||| | | | | |||||| || || ||| | ||| || |||| Sbjct 14401 ATCTTGGCT--TTCACATTGTCGATTGTGTCGGAGGATTCGACTTCTAAGGTTATTGTTT 14458 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | ||||| | ||||| || || |||||||||||| Sbjct 14459 TGCCGGTTAAGGTTTTTACGAAGATCTGCATTTTG 14493 >seq16006 Length=16259 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| ||||| |||||||| ||||| |||||||||||||||| ||| || | ||| Sbjct 13246 AGTACCAAATGCAATGTGGACTCTTTTTGGATGTTGTAGTCGGCCAGGGTCCTGCCATCC 13187 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| ||||| ||| |||| | || || ||||| || | || ||||| || Sbjct 13186 TCGAGTTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGCGGGATCCCTTCTTTATCT 13127 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | | ||||| | || |||| ||||||| Sbjct 13126 TGGATCTTTGC--CTTGACGTTGTCAATGGTGTCAGAGCTTTCGACCTCCAAAGTGATGG 13069 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || |||| || ||||| || || ||||| Sbjct 13068 TCTTCCCTGTCAAAGTCTTGACGAAGATTTGCAT 13035 >seq6710 Length=13574 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | ||||| || |||| ||| ||||| |||||||| || ||||||||||| || Sbjct 2920 CCTCCCCTAAGCCTAAGAACCAGATGAAGCGTTGACTCCTTCTGGATGTTGTAGTCTGCA 2861 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||||||| ||||| || ||| |||| | | ||| |||||| ||| Sbjct 2860 AGAGTTCGACCATCCTCCAACTGTTTCCCAGCAAAAATCAATCTCTGCTGGTCCGGAGGA 2801 Query 16829 ACGCCCTCTTTGTC 16842 | ||| |||||||| Sbjct 2800 ATGCCTTCTTTGTC 2787 >seq8384 Length=24589 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 16720 CCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779 ||| || || | ||| || || || |||||||| |||||||| ||||||| ||| | Sbjct 3573 CCTGAGAACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAATCGGCCAAGGTACGACC 3514 Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||||| | || || || ||| | || | || ||| ||||| || | || ||||| Sbjct 3513 GTCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTT 3454 Query 16840 GTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 ||| |||| | ||| || | | | |||||| | ||| ||| | ||||| Sbjct 3453 GTCTTGGATTTTCGCCTTAACATTATCGATAGTGTCAGAGCTCTCGACTTCGAGAGTGAT 3394 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||||| || || || || || ||||| |||||||| || Sbjct 3393 GGTTTTACCAGTAAGAGTCTTAACAAAGATCTGCATATT 3355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| ||||||||||| || |||||||| || || | ||| | ||| Sbjct 3797 AGAACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCC 3738 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| || |||| | || ||| ||||| || | || |||||||| Sbjct 3737 TCAAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCC 3678 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| | ||| ||||| ||||||| Sbjct 3677 TGGATCTTAGC--CTTGACGTTATCGATTGTGTCAGAGCTCTCGACTTCCAAAGTGATGG 3620 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || || || ||||| |||||||| Sbjct 3619 TTTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 3586 >seq7910 Length=9655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 16720 CCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779 ||| || || | ||| || || || |||||||| |||||||| ||||||| ||| | Sbjct 1809 CCTGAGAACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAATCGGCCAAGGTACGACC 1750 Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||||| | || || || ||| | || | || ||| ||||| || | || ||||| Sbjct 1749 GTCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTT 1690 Query 16840 GTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 ||| |||| | ||| || | | | |||||| | ||| ||| | ||||| Sbjct 1689 GTCTTGGATTTTCGCCTTAACATTATCGATAGTGTCAGAGCTCTCGACTTCGAGAGTGAT 1630 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||||| || || || || || ||||| |||||||| || Sbjct 1629 GGTTTTACCAGTAAGAGTCTTAACAAAGATCTGCATATT 1591 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| ||||||||||| || |||||||| || || | ||| | ||| Sbjct 2033 AGAACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCC 1974 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| || |||| | || ||| ||||| || | || |||||||| Sbjct 1973 TCAAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCC 1914 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| | ||| ||||| ||||||| Sbjct 1913 TGGATCTTAGC--CTTGACGTTATCGATTGTGTCAGAGCTCTCGACTTCCAAAGTGATGG 1856 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || || || ||||| |||||||| Sbjct 1855 TTTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 1822 >seq4675 Length=16269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 16720 CCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779 ||| || || | ||| || || || |||||||| |||||||| ||||||| ||| | Sbjct 15960 CCTGAGAACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAATCGGCCAAGGTACGACC 15901 Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||||| | || || || ||| | || | || ||| ||||| || | || ||||| Sbjct 15900 GTCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTT 15841 Query 16840 GTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 ||| |||| | ||| || | | | |||||| | ||| ||| | ||||| Sbjct 15840 GTCTTGGATTTTCGCCTTAACATTATCGATAGTGTCAGAGCTCTCGACTTCGAGAGTGAT 15781 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||||| || || || || || ||||| |||||||| || Sbjct 15780 GGTTTTACCAGTAAGAGTCTTAACAAAGATCTGCATATT 15742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| ||||||||||| || |||||||| || || | ||| | ||| Sbjct 16184 AGAACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCC 16125 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| || |||| | || ||| ||||| || | || |||||||| Sbjct 16124 TCAAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCC 16065 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| | ||| ||||| ||||||| Sbjct 16064 TGGATCTTAGC--CTTGACGTTATCGATTGTGTCAGAGCTCTCGACTTCCAAAGTGATGG 16007 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || || || ||||| |||||||| Sbjct 16006 TTTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 15973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404988889524250