Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq945 264 1e-65 seq3314 161 1e-34 seq14165 116 5e-21 seq4091 116 5e-21 >seq945 Length=6199 Score = 264 bits (292), Expect = 1e-65 Identities = 612/911 (67%), Gaps = 16/911 (2%) Strand=Plus/Minus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || || || || || | ||| || ||||||||||| || || | || || || Sbjct 2509 TTTCTGATACTCCCCAACCCTTTTCTCAAAAAAATTAGTCTTCCCCTGCAACGAGATCAA 2450 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||| |||| || ||||| |||||||| |||||| | | ||||| | | Sbjct 2449 CTCCATCCAATCAAACGGATTCTGCACATTATACATTTTTGAATAACCCAACGCCCCCAA 2390 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 ||| ||||| |||||| | || ||||| |||||| || | |||||| || | | Sbjct 2389 CAACCTATCCGCGACATACTCAATATAAACACTCATCAAATCCCCATTCATCCCAACCAA 2330 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 | || | ||| | || || || ||| || || ||||||| ||||| Sbjct 2329 AGCACACGGCAACGCCTCGCAAACGAACTCCCTTTCGATGTTTACAGCGTCTGCGATAAT 2270 Query 32609 AGATCTTACTGTTTCTTCACTCGG-TGGATA--CAATAAA-TGTTTAAACATCAAACATG 32664 | |||| ||| |||||| | || ||| ||| ||| ||| |||||| | Sbjct 2269 CCCTTTTACGCGTTCCTCACTCAACTTCATTTTCAACAAACTGTATAA----CAAACACG 2214 Query 32665 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 32724 |||||||||| || | |||||||||||| || || ||||| |||||||| | || | Sbjct 2213 CGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGTTAAACCCG 2154 Query 32725 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAAAATT 32783 |||||| ||||| ||||| | |||||| || | |||||| ||| ||||| || || Sbjct 2153 GCATTAACCCACGTTTTTTCAACCAAAAAATCG-CGCAAAAACTCCCCGAAAAAAATATC 2095 Query 32784 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCAC 32843 ||||| || ||||| || |||| | ||| | || || ||| ||||| Sbjct 2094 CCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAGTTTCGGATCCATCAATCCAT 2035 Query 32844 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903 || |||||| | ||| || || | |||||||| || || || ||||| ||| | Sbjct 2034 TTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATAGCCCGAAATAAC 1975 Query 32904 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 32963 ||||||||||||| |||||||| ||| | || | ||| | |||||||||||| ||| Sbjct 1974 CGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACTATACATTTCAGAA 1915 Query 32964 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATCTGTAC 33022 ||||| || ||||| || ||||| |||||||| || ||| | ||||||| | || || Sbjct 1914 TGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCA-CGCGCCTCGGCGACTTGGAC 1856 Query 33023 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33082 |||| | ||| || | || | ||||| || || ||||| || || ||||| Sbjct 1855 TTCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTGACGCGGCGAAAAA 1796 Query 33083 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT--CATTG 33140 || | || || | || || | |||| | |||| | ||| | | ||| Sbjct 1795 AGCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAGGCGTCCCAGTGACGTTG 1736 Query 33141 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33200 ||||| |||| ||| |||||||| | ||||||||||| || || || ||||||||| Sbjct 1735 --ATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCGGCTTTTTTATAC 1678 Query 33201 ATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCA 33260 || | |||||| | | ||||||||||| || ||| |||| || ||| ||| ||| Sbjct 1677 ATTTCCCAGATTTGTGGGTATTGAATTGGGAACATACAGAATCGATCTGGGTTTGGTGCC 1618 Query 33261 AGGATTGGTTC 33271 | | |||||| Sbjct 1617 AAAAGTGGTTC 1607 >seq3314 Length=31422 Score = 161 bits (178), Expect = 1e-34 Identities = 293/423 (69%), Gaps = 12/423 (3%) Strand=Plus/Plus Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||||| | ||||||| ||||||||||| ||||| || || || || |||||| | Sbjct 22876 ATCCACTTAAGCGCCCAATTGGCCTTCTTTTGAACACACGGAATAGTTTCAATAGCACGA 22935 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG---ACTATAC 32954 || || | | |||||| || ||| |||| ||| | || |||||| ||||||| Sbjct 22936 AACAGCCTGCTCTTTTCACTAGAATCCTTAATATAAGATTC---CAAAAGCAAACTATAC 22992 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGT-AGAAGCATCTAGCCTCGGT 33013 ||||||||||| || || |||||||| || ||||| |||| | ||||| | ||||||| Sbjct 22993 ATTTCCGAATGGATATTCTCAATGGCAATCTGAAACCCGTAAAAAGCA-CGTGCCTCGGC 23051 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 ||||||| ||| | ||| | | || |||||||| || ||||| || || Sbjct 23052 GATCTGTATCTCTTTCATAAACCTTGAAGCCAAATTTTCCAAAACAATTCCATCTGATGC 23111 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33133 || ||||| || | || || | | || | |||| | ||||| | | Sbjct 23112 GGCGAAAAATGCGAGAACGTGAGTCACGAAGTGACGTTCGCCGTCTGTTAACGACTCGTA 23171 Query 33134 AT--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || | ||| |||| |||| ||| |||||||| ||||||||||||| || || || Sbjct 23172 ATGACGTTG--GTCTTGCGATAAATCGACTTCTTCTGCTGTCCAAAATGAGGCTTCGGCT 23229 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 33251 ||||| ||||| | ||| || | | ||||| |||||||| || ||||| | |||| Sbjct 23230 TTTTTGTACATTTCCCAAATTTGTGGGTATTGGATTGGAAACATGCAGAATCTGTCTGGA 23289 Query 33252 TTT 33254 ||| Sbjct 23290 TTT 23292 >seq14165 Length=56756 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | |||| || || | |||| | || | || |||||| | ||| ||| Sbjct 34421 CCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCCA 34480 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| ||||| || || || ||||||||| | ||||| |||||| ||| || Sbjct 34481 TTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGAA 34540 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| ||||| ||| || | || ||| |||||||| ||||| ||| Sbjct 34541 ACACCAATTCCTCCTGCTGATTTGCTAATAACAGCACATTCCTTTAACGTGTCATATATG 34600 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || || || ||||| || ||||| | || ||||||||| Sbjct 34601 CCTTCAATGCTATCTTCTTTCATGCATATCAGGAAACAGCTA 34642 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| ||||| || || || |||||| | | || | | | | Sbjct 34799 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 34858 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || |||| | | | || || ||||| | |||||| || || || || | ||||||| Sbjct 34859 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 34918 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||| ||||||||||| || | ||| || || ||||| | || ||| | || | Sbjct 34919 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 34978 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| |||||||| | | || |||||| || || || ||||| Sbjct 34979 GTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCGGTCATATATAAT 35025 >seq4091 Length=20028 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | |||| || || | |||| | || | || |||||| | ||| ||| Sbjct 16137 CCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCCA 16196 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| ||||| || || || ||||||||| | ||||| |||||| ||| || Sbjct 16197 TTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGAA 16256 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| ||||| ||| || | || ||| |||||||| ||||| ||| Sbjct 16257 ACACCAATTCCTCCTGCTGATTTGCTAATAACAGCACATTCCTTTAACGTGTCATATATG 16316 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || || || ||||| || ||||| | || ||||||||| Sbjct 16317 CCTTCAATGCTATCTTCTTTCATGCATATCAGGAAACAGCTA 16358 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| ||||| || || || |||||| | | || | | | | Sbjct 16516 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 16575 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || |||| | | | || || ||||| | |||||| || || || || | ||||||| Sbjct 16576 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 16635 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||| ||||||||||| || | ||| || || ||||| | || ||| | || | Sbjct 16636 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 16695 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| |||||||| | | || |||||| || || || ||||| Sbjct 16696 GTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCGGTCATATATAAT 16742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633472997970000