Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq13411 98.7 8e-16 seq5340 98.7 8e-16 >seq13411 Length=19963 Score = 98.7 bits (108), Expect = 8e-16 Identities = 166/240 (69%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||| || || || ||||| | ||||||||||| || ||| | ||| ||| || Sbjct 11259 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 11318 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| | | | | | || ||| || ||| |||||||||||| | || || Sbjct 11319 TCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGAC 11378 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||| | | || | ||| ||||||||| | ||||| | || | ||||| || Sbjct 11379 CAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTAC 11438 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGC---GCGGTGGCAATAAA 111420 ||||| ||||||||||| || || ||||| || || ||| | | |||||| ||| ||| Sbjct 11439 AATATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGGTGCCAAAAAA 11498 >seq5340 Length=22833 Score = 98.7 bits (108), Expect = 8e-16 Identities = 166/240 (69%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||| || || || ||||| | ||||||||||| || ||| | ||| ||| || Sbjct 14492 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 14433 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| | | | | | || ||| || ||| |||||||||||| | || || Sbjct 14432 TCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGAC 14373 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||| | | || | ||| ||||||||| | ||||| | || | ||||| || Sbjct 14372 CAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTAC 14313 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGC---GCGGTGGCAATAAA 111420 ||||| ||||||||||| || || ||||| || || ||| | | |||||| ||| ||| Sbjct 14312 AATATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGGTGCCAAAAAA 14253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422936497315000