Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq10366 91.5 3e-13 seq13990 89.7 1e-12 seq13420 89.7 1e-12 seq13419 89.7 1e-12 seq9152 89.7 1e-12 seq18225 87.8 4e-12 seq16990 87.8 4e-12 seq16814 87.8 4e-12 seq14971 87.8 4e-12 seq8757 87.8 4e-12 seq7510 87.8 4e-12 seq4881 87.8 4e-12 seq4385 87.8 4e-12 seq3070 87.8 4e-12 seq2119 87.8 4e-12 seq17174 86.0 1e-11 seq10392 86.0 1e-11 >seq10366 Length=17472 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 8788 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 8729 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 8728 AGCCCCAC 8721 >seq13990 Length=27156 Score = 89.7 bits (98), Expect = 1e-12 Identities = 200/298 (67%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 218506 ATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAG 218565 ||||| || |||||||||| |||| || || ||||| || || | |||| | | Sbjct 17147 ATCCCATACCGTGACTTCATCAACAAAGAACTTATTCTGTTTTCAATGGCTGATCTTCAA 17088 Query 218566 CGTTCTATTCCCAGCG-TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624 | || || |||| | |||||||||| | || || || | ||||| || || Sbjct 17087 AGATCAAT-CCCATCTATGGTGGATGGATTGAAACCGGGTCAAAGAAAGATTCTGTTCTG 17029 Query 218625 CGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATC 218684 || || ||| | | | | || ||| |||| || ||||| || ||| ||||| || Sbjct 17028 TGCTTTTAAGAAGCCCATTTTCCAGGAAGTTAAAGTTGCTCAATTCAGTGGCTATGTGTC 16969 Query 218685 CGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGC 218744 || |||| || ||||| |||||||||||||| | | || | |||||||| Sbjct 16968 TGAGCACTCTGCTTATCATCATGGTGAGCAGAGTCTTGTCAGCACAATCATTGGCATGGC 16909 Query 218745 ACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || ||| |||||||||||| ||||| ||| | || ||| | || ||||||||| Sbjct 16908 CCAAAACTTTGTGGGCAGTAATAACATTAACCTTCTTTACCCAAGTGGGCAGTTTGGT 16851 >seq13420 Length=26452 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 11754 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 11695 Query 142562 GCCCCAC 142568 ||||||| Sbjct 11694 GCCCCAC 11688 >seq13419 Length=57985 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 49145 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 49204 Query 142562 GCCCCAC 142568 ||||||| Sbjct 49205 GCCCCAC 49211 >seq9152 Length=8853 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 3814 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 3873 Query 142562 GCCCCAC 142568 ||||||| Sbjct 3874 GCCCCAC 3880 >seq18225 Length=15034 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1766 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1707 Query 142563 CCCCAC 142568 |||||| Sbjct 1706 CCCCAC 1701 >seq16990 Length=11292 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10353 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10412 Query 142563 CCCCAC 142568 |||||| Sbjct 10413 CCCCAC 10418 >seq16814 Length=16086 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8676 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8617 Query 142563 CCCCAC 142568 |||||| Sbjct 8616 CCCCAC 8611 >seq14971 Length=44511 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 24941 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 25000 Query 142563 CCCCAC 142568 |||||| Sbjct 25001 CCCCAC 25006 >seq8757 Length=6473 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1767 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1708 Query 142563 CCCCAC 142568 |||||| Sbjct 1707 CCCCAC 1702 >seq7510 Length=8825 Score = 87.8 bits (96), Expect = 4e-12 Identities = 199/298 (67%), Gaps = 1/298 (0%) Strand=Plus/Minus Query 218506 ATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAG 218565 ||||| || |||||||||| |||| || || ||||| || || | |||| | | Sbjct 2916 ATCCCATACCGTGACTTCATCAACAAAGAACTTATTCTGTTTTCAATGGCTGATCTTCAA 2857 Query 218566 CGTTCTATTCCCAGCG-TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624 | || || || | | |||||||||| | || || || | ||||| || || Sbjct 2856 AGATCAATCCCAATCTATGGTGGATGGATTGAAACCGGGTCAAAGAAAGATTCTGTTCTG 2797 Query 218625 CGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATC 218684 || || ||| | | | | || ||| |||| || ||||| || ||| ||||| || Sbjct 2796 TGCTTTTAAGAAGCCCATTTTCCAGGAAGTTAAAGTTGCTCAATTCAGTGGCTATGTGTC 2737 Query 218685 CGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGC 218744 || |||| || ||||| |||||||||||||| | | || | |||||||| Sbjct 2736 TGAGCACTCTGCTTATCATCATGGTGAGCAGAGTCTTGTCAGCACAATCATTGGCATGGC 2677 Query 218745 ACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || ||| |||||||||||| ||||| ||| | || ||| | || ||||||||| Sbjct 2676 CCAAAACTTTGTGGGCAGTAATAACATTAACCTTCTTTACCCAAGTGGGCAGTTTGGT 2619 >seq4881 Length=15230 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5876 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5817 Query 142563 CCCCAC 142568 |||||| Sbjct 5816 CCCCAC 5811 >seq4385 Length=35218 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 21718 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 21659 Query 142563 CCCCAC 142568 |||||| Sbjct 21658 CCCCAC 21653 >seq3070 Length=9038 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 7898 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7957 Query 142563 CCCCAC 142568 |||||| Sbjct 7958 CCCCAC 7963 >seq2119 Length=8362 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1470 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1529 Query 142563 CCCCAC 142568 |||||| Sbjct 1530 CCCCAC 1535 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2788 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2847 Query 142563 CCCCAC 142568 |||||| Sbjct 2848 CCCCAC 2853 >seq17174 Length=19302 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 8941 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8882 Query 142564 CCCAC 142568 ||||| Sbjct 8881 CCCAC 8877 >seq10392 Length=17411 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 10918 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10977 Query 142564 CCCAC 142568 ||||| Sbjct 10978 CCCAC 10982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027572429133075