Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq13411 114 9e-21 seq5340 114 9e-21 seq8889 95.1 9e-15 seq8384 91.5 1e-13 seq7910 91.5 1e-13 seq5280 91.5 1e-13 seq16006 89.7 4e-13 seq16550 86.0 4e-12 seq14670 84.2 2e-11 seq6802 84.2 2e-11 seq6637 84.2 2e-11 seq10926 82.4 5e-11 >seq13411 Length=19963 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| ||||| |||||||| || ||| | ||| ||| | Sbjct 11258 CAAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATC 11317 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | | || | || || ||| || ||||| || | || | | Sbjct 11318 CTCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGA 11377 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 |||||| | | |||||||| ||||||||||| ||||| | || | ||||| || Sbjct 11378 CCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTA 11437 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| || || ||||| ||||||||| |||| ||||||||||| || || Sbjct 11438 CAATATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGG 11488 >seq5340 Length=22833 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| ||||| |||||||| || ||| | ||| ||| | Sbjct 14493 CAAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATC 14434 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | | || | || || ||| || ||||| || | || | | Sbjct 14433 CTCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGA 14374 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 |||||| | | |||||||| ||||||||||| ||||| | || | ||||| || Sbjct 14373 CCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTA 14314 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| || || ||||| ||||||||| |||| ||||||||||| || || Sbjct 14313 CAATATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGG 14263 >seq8889 Length=9065 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| ||||||| || || || |||||||| || |||| ||| | | Sbjct 2071 AATGCAGAT-TTTGTTAAAACTTTGACAGGAAAAACCATCACTTTGGAGGTGGAGTCTTC 2129 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| || ||| ||||| ||||| | || | |||| Sbjct 2130 TGATACTATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGGATCCCACCAGACCA 2189 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || |||||||| || |||||| | |||||| | || | || |||||||| Sbjct 2190 GCAGAGGCTCATCTTTGCCGGTAAACAATTGGAAGATGGACGGACACTTGCTGATTACAA 2249 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||||||||||| ||||| ||||| Sbjct 2250 CATTCAGAAGGAGTCTACCCTTCA 2273 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||||| ||||| |||||||| || |||| || | | Sbjct 1844 ATGCAGATCTTTGTGAAGACATTGACGGGAAAAACCATCACTTTGGAGGTTGAGAGCTCT 1903 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || || ||||| || || | || | |||| Sbjct 1904 GATACCATTGACAACGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCAGACCAG 1963 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || |||||||||||||| || || ||| | ||| |||||||||| || Sbjct 1964 CAGAGGTTGATTTTTGCTGGCAAACAGCTTGAGGATGGACGTACTTTGGCCGATTATAAC 2023 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| ||||| || ||| |||| | ||| | || || ||| Sbjct 2024 ATTCAGAAGGAGTCTACCCTCCATCTGGTTCTTCGTCTTCGTGGTGGA 2071 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 21823 AATAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAA 21882 |||| | || ||||| || || | || ||||| || || |||||||| || |||| Sbjct 1605 AATACAGAAACATGCAGATCTTCGTCAAGACATTGACAGGGAAAACCATCACTTTGGAGG 1664 Query 21883 CGGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTAC 21942 ||| | | || || | | | || | || ||| ||| ||||| || ||| | | Sbjct 1665 TCGAAAGCTCTGACACTATTGACAATGTCAAAGCAAAGATTCAAGATAAGGAAGGTATCC 1724 Query 21943 CTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGG 22002 | | |||| |||||| | ||||||||||| || || || |||||| | ||| ||| Sbjct 1725 CCCCAGACCAGCAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGAACGTTGG 1784 Query 22003 CCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | || ||||| || || ||||| || || || ||| |||| | ||| | || || || Sbjct 1785 CAGACTACAACATCCAAAAGGAGTCGACCCTCCATCTGGTCCTCCGTCTTCGTGGTGG 1842 >seq8384 Length=24589 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| || || || |||||||| || |||| |||| | | Sbjct 4042 ATGCAGATCTTTGTTAAAACCTTGACAGGGAAAACCATCACTTTGGAGGTGGAATCGTCT 4101 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| ||||| ||||| | || |||| Sbjct 4102 GATACTATTGATAATGTCAAGGCCAAGATTCAGGATAAGGAGGGGATCCCACCGGACCAG 4161 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || |||||||| |||||||| |||||| | || | ||||||||||| Sbjct 4162 CAGAGGTTGATATTTGCTGGTAAACAACTGGAAGATGGTAGGACGCTTGCCGATTACAAC 4221 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 ||||||||||| || || ||||| Sbjct 4222 ATTCAGAAGGAGTCCACCCTTCA 4244 >seq7910 Length=9655 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| || || || |||||||| || |||| |||| | | Sbjct 2278 ATGCAGATCTTTGTTAAAACCTTGACAGGGAAAACCATCACTTTGGAGGTGGAATCGTCT 2337 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| ||||| ||||| | || |||| Sbjct 2338 GATACTATTGATAATGTCAAGGCCAAGATTCAGGATAAGGAGGGGATCCCACCGGACCAG 2397 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || |||||||| |||||||| |||||| | || | ||||||||||| Sbjct 2398 CAGAGGTTGATATTTGCTGGTAAACAACTGGAAGATGGTAGGACGCTTGCCGATTACAAC 2457 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 ||||||||||| || || ||||| Sbjct 2458 ATTCAGAAGGAGTCCACCCTTCA 2480 >seq5280 Length=29361 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || |||||||| || |||| ||| | | Sbjct 6772 ATGCAGATTTTTGTGAAGACCTTGACAGGGAAAACCATCACTTTGGAGGTGGAGTCTTCT 6831 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| || ||| ||||| ||||| | || | | || Sbjct 6832 GATACGATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGGATCCCACCAGATCAG 6891 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||| ||||| |||||| | |||||| | || | || ||||||||| Sbjct 6892 CAGAGGTTGATCTTCGCTGGGAAACAATTGGAAGATGGACGTACACTTGCAGATTACAAT 6951 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATT-AATA 22069 ||||||||||| || || |||||| | || | ||| | || || || |||| |||| Sbjct 6952 ATTCAGAAGGAGTCCACCCTTCATCTTGTGCTCCGTCTTCGTGGTGGTTATTGAATA 7008 >seq16006 Length=16259 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| || || || |||||||| || | || ||| | Sbjct 13263 ATGCAGATATTTGTGAAAACCTTGACAGGAAAAACCATCACTTTAGAGGTTGAAAGTTCT 13322 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | | ||| || ||| ||||||||||| | || | |||| Sbjct 13323 GATACGATTGACAACGTCAAGGCTAAGATTCAGGATAAAGAGGGGATCCCGCCAGACCAG 13382 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || ||||||||||| || ||||| || |||||| ||| | || || |||||| Sbjct 13383 CAAAGGCTTATCTTTGCAGGAAAACAGCTCGAAGATGGGCGTACTCTAGCAGACTACAAT 13442 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||| || ||||| |||||| |||| Sbjct 13443 ATCCAGAAAGAGTCTACCCTTCATTTGGT 13471 >seq16550 Length=20979 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || || |||||||| |||| ||| | || Sbjct 18358 ATGCAGATCTTTGTCAAGACGTTGACAGGAAAGACCATTACTTTGGAGGTCGAAAGCTCA 18299 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || ||| ||||| || || | || | |||| Sbjct 18298 GACACAATCGATAATGTTAAGGCGAAGATTCAAGATAAGGAAGGGATCCCACCAGACCAG 18239 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || ||||||||||| ||||| || ||| | || |||| ||||| || Sbjct 18238 CAGAGATTGATTTTTGCTGGCAAGCAACTCGAGGATGGCAGGACCTTGGCAGATTATAAC 18179 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| ||||| || |||| | ||| | || || || Sbjct 18178 ATCCAGAAGGAATCAACTCTGCACTTGGTCCTTCGTCTTCGTGGTGG 18132 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || ||||| || || | || ||| | Sbjct 17674 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAAACAATCACTTTAGAGGTTGAAAGTTCT 17615 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| || ||| |||||||| || | || | |||| Sbjct 17614 GATACGATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCACCAGACCAG 17555 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || ||||||||||| || |||||||| |||||| ||| |||| || ||||| Sbjct 17554 CAAAGGCTTATCTTTGCAGGAAAACAACTCGAAGATGGGCGTACTTTGGCAGACTACAAC 17495 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 || |||||||| ||||| ||||| ||||| | || || Sbjct 17494 ATCCAGAAGGAGTCTACCCTTCACTTGGTACTGCGGTT 17457 >seq14670 Length=61898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | || |||||||| |||||| |||||||| || ||| | || |||||| Sbjct 32009 CAACAAAGATTGATATTTGCTGGGAAACAATTAGAAGATGGAAGAACACTTGCTGATTAC 31950 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || |||||||| || |||||| | || || | || |||| ||| Sbjct 31949 AATATCCAAAAGGAATCGACGCTTCATCTCGTTTTGAGATTGAGAGGTGGA 31899 >seq6802 Length=18417 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | || |||||||| |||||| |||||||| || ||| | || |||||| Sbjct 11175 CAACAAAGATTGATATTTGCTGGGAAACAATTAGAAGATGGAAGAACACTTGCTGATTAC 11234 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || |||||||| || |||||| | || || | || |||| ||| Sbjct 11235 AATATCCAAAAGGAATCGACGCTTCATCTCGTTTTGAGATTGAGAGGTGGA 11285 >seq6637 Length=15695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | || |||||||| |||||| |||||||| || ||| | || |||||| Sbjct 3887 CAACAAAGATTGATATTTGCTGGGAAACAATTAGAAGATGGAAGAACACTTGCTGATTAC 3946 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || |||||||| || |||||| | || || | || |||| ||| Sbjct 3947 AATATCCAAAAGGAATCGACGCTTCATCTCGTTTTGAGATTGAGAGGTGGA 3997 >seq10926 Length=11099 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || ||||| || || | || ||| | Sbjct 8254 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAAACAATCACTTTAGAGGTTGAAAGTTCT 8195 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| || ||| |||||||| || | || | |||| Sbjct 8194 GATACGATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCACCAGACCAG 8135 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || ||||||||||| || |||||||| |||||| ||| |||| || ||||| Sbjct 8134 CAAAGGCTTATCTTTGCAGGAAAACAACTCGAAGATGGGCGTACTTTGGCAGACTACAAC 8075 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 || |||||||| ||||| ||||| ||||| | || || Sbjct 8074 ATCCAGAAGGAGTCTACCCTTCACTTGGTACTGCGGTT 8037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358037179731550