Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5280 87.8 1e-12 seq8384 86.0 5e-12 seq7910 86.0 5e-12 seq6710 86.0 5e-12 seq8889 82.4 6e-11 >seq5280 Length=29361 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/128 (77%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 33887 ATATGCAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAA 33946 |||| |||| |||| || | || || ||||| |||||||| ||| ||||||||||| Sbjct 7009 ATATTCAAT---AACCACCACGAAGACGGAGCACAAGATGAAGGGTGGACTCCTTCTGAA 6953 Query 33947 TGTTGTAATCTGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGC 34005 | |||||||||| ||| ||| || | || |||||||| || || || || |||| | | Sbjct 6952 TATTGTAATCTG-CAAGTGTACGTCCATCTTCCAATTGTTTCCCAGCGAAGATCAACCTC 6894 Query 34006 TGCTGATC 34013 |||||||| Sbjct 6893 TGCTGATC 6886 >seq8384 Length=24589 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || ||||| ||| ||||||||||||||||||||| | ||| ||| | Sbjct 4259 AGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATC-GGCAAGCGTC-C 4202 Query 33970 T--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCT 34027 | | || |||| ||| || || |||||||||| | |||||| ||| || | | || Sbjct 4201 TACCATCTTCCAGTTGTTTACCAGCAAATATCAACCTCTGCTGGTCCGGTGGGATCCCCT 4142 Query 34028 CTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCG 34087 | || ||| ||| || ||| | | | | |||||| ||||| || | | Sbjct 4141 CCTTATCCTGAATCTTGGCCTTGACATTATCAATAGTATCAGACGATTCCACCTCCAAAG 4082 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || ||||| || || | ||||| |||||||| ||||| Sbjct 4081 TGATGGTTTTCCCTGTCAAGGTTTTAACAAAGATCTGCAT 4042 >seq7910 Length=9655 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || ||||| ||| ||||||||||||||||||||| | ||| ||| | Sbjct 2495 AGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATC-GGCAAGCGTC-C 2438 Query 33970 T--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCT 34027 | | || |||| ||| || || |||||||||| | |||||| ||| || | | || Sbjct 2437 TACCATCTTCCAGTTGTTTACCAGCAAATATCAACCTCTGCTGGTCCGGTGGGATCCCCT 2378 Query 34028 CTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCG 34087 | || ||| ||| || ||| | | | | |||||| ||||| || | | Sbjct 2377 CCTTATCCTGAATCTTGGCCTTGACATTATCAATAGTATCAGACGATTCCACCTCCAAAG 2318 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || ||||| || || | ||||| |||||||| ||||| Sbjct 2317 TGATGGTTTTCCCTGTCAAGGTTTTAACAAAGATCTGCAT 2278 >seq6710 Length=13574 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| || |||||||||||||| ||||||||| |||||||| ||||| Sbjct 2920 CCTCCCCTAAGCCTAAGAACCAGATGAAGCGTTGACTCCTTCTGGATGTTGTAGTCTGCA 2861 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || ||||| || || || ||||| |||| | |||||| ||| || Sbjct 2860 AGAGTTCGACCATCCTCCAACTGTTTCCCAGCAAAAATCAATCTCTGCTGGTCCGGAGGA 2801 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||||||||| Sbjct 2800 ATGCCTTCTTTGTCC 2786 >seq8889 Length=9065 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/223 (70%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || ||||| || ||||| || ||||||||||||||||||||| | ||| ||| || Sbjct 2288 AGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAG-CAAGTGTCCG 2230 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || |||||||| || |||||||| || || | |||||| || || | | ||| Sbjct 2229 TCCATCTTCCAATTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATCCCCTC 2170 Query 34029 TTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTCGCATTCGAC 34085 || ||| ||| || ||| | || | | | |||||| ||| || || | Sbjct 2169 CTTATCCTGAATCTTGGCCTTGACATTGTCA---ATAGTATCAGAAGACTCCACCTCCAA 2113 Query 34086 CGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || |||||||| || | ||||| ||||| || |||||| Sbjct 2112 AGTGATGGTTTTTCCTGTCAAAGTTTTAACAAA-ATCTGCATT 2071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396965253100150