Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq8384 109 6e-19 seq7910 109 6e-19 seq4675 109 6e-19 seq16550 95.1 1e-14 seq16006 84.2 2e-11 seq8889 82.4 8e-11 seq5280 82.4 8e-11 seq1845 82.4 8e-11 >seq8384 Length=24589 Score = 109 bits (120), Expect = 6e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| |||| |||||| ||||| ||||||||||| || || || | || || Sbjct 3794 ACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCCTCA 3735 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| || | | ||||||||| | || | | || |||||| | Sbjct 3734 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGG 3675 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176 || || |||| | | | ||||| |||| || || || | ||||||||| Sbjct 3674 ATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCTC---TCGACTTCCAAAGTGATGGTT 3618 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || ||||| |||||||| ||||| Sbjct 3617 TTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 3586 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| || || |||| | || || || || |||||||| || Sbjct 4233 CTCCTTCTGAATGTTGTAATCGGCAAGCGTCCTACCATCTTCCAGTTGTTTACCAGCAAA 4174 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 ||| | | ||||||||| | ||| | | |||||| ||| ||| | || | |||| Sbjct 4173 TATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCC-TGAATCTTGGCCTTGACAT 4115 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || ||||||||| || | ||||||||||| || || | || || | Sbjct 4114 TATCAATAGTATCAGACGATTCCACCTCCAAAGTGATGGTTTTCCCTGTCAAGGTTTTAA 4055 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 4054 CAAAGATCTGCAT 4042 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| |||||||| |||| || || |||| || |||||||| ||||| || Sbjct 3548 TCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAG 3489 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | | ||||||||| | || | | || ||||| |||||| || | | Sbjct 3488 ATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTGGATTTTCGCCTTAACATTA 3429 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | ||||| |||| || || |||| ||||||||||| || || || ||||| Sbjct 3428 TCGATAGTGTCAGAGCTC---TCGACTTCGAGAGTGATGGTTTTACCAGTAAGAGTCTTA 3372 Query 42195 ACAAAGATTTGCATTTT 42211 |||||||| ||||| || Sbjct 3371 ACAAAGATCTGCATATT 3355 >seq7910 Length=9655 Score = 109 bits (120), Expect = 6e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| |||| |||||| ||||| ||||||||||| || || || | || || Sbjct 2030 ACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCCTCA 1971 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| || | | ||||||||| | || | | || |||||| | Sbjct 1970 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGG 1911 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176 || || |||| | | | ||||| |||| || || || | ||||||||| Sbjct 1910 ATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCTC---TCGACTTCCAAAGTGATGGTT 1854 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || ||||| |||||||| ||||| Sbjct 1853 TTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 1822 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| || || |||| | || || || || |||||||| || Sbjct 2469 CTCCTTCTGAATGTTGTAATCGGCAAGCGTCCTACCATCTTCCAGTTGTTTACCAGCAAA 2410 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 ||| | | ||||||||| | ||| | | |||||| ||| ||| | || | |||| Sbjct 2409 TATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCC-TGAATCTTGGCCTTGACAT 2351 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || ||||||||| || | ||||||||||| || || | || || | Sbjct 2350 TATCAATAGTATCAGACGATTCCACCTCCAAAGTGATGGTTTTCCCTGTCAAGGTTTTAA 2291 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 2290 CAAAGATCTGCAT 2278 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| |||||||| |||| || || |||| || |||||||| ||||| || Sbjct 1784 TCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAG 1725 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | | ||||||||| | || | | || ||||| |||||| || | | Sbjct 1724 ATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTGGATTTTCGCCTTAACATTA 1665 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | ||||| |||| || || |||| ||||||||||| || || || ||||| Sbjct 1664 TCGATAGTGTCAGAGCTC---TCGACTTCGAGAGTGATGGTTTTACCAGTAAGAGTCTTA 1608 Query 42195 ACAAAGATTTGCATTTT 42211 |||||||| ||||| || Sbjct 1607 ACAAAGATCTGCATATT 1591 >seq4675 Length=16269 Score = 109 bits (120), Expect = 6e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| |||| |||||| ||||| ||||||||||| || || || | || || Sbjct 16181 ACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCCTCA 16122 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| || | | ||||||||| | || | | || |||||| | Sbjct 16121 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGG 16062 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176 || || |||| | | | ||||| |||| || || || | ||||||||| Sbjct 16061 ATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCTC---TCGACTTCCAAAGTGATGGTT 16005 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || ||||| |||||||| ||||| Sbjct 16004 TTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 15973 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| |||||||| |||| || || |||| || |||||||| ||||| || Sbjct 15935 TCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAG 15876 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | | ||||||||| | || | | || ||||| |||||| || | | Sbjct 15875 ATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTGGATTTTCGCCTTAACATTA 15816 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | ||||| |||| || || |||| ||||||||||| || || || ||||| Sbjct 15815 TCGATAGTGTCAGAGCTC---TCGACTTCGAGAGTGATGGTTTTACCAGTAAGAGTCTTA 15759 Query 42195 ACAAAGATTTGCATTTT 42211 |||||||| ||||| || Sbjct 15758 ACAAAGATCTGCATATT 15742 >seq16550 Length=20979 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| || |||||||||||| ||||||||||| || || ||| | || || Sbjct 17922 ACCAAATGCAGAGTCGACTCCTTTTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCA 17981 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| ||||| || || || | ||| ||||| | ||| | | ||||| | | || Sbjct 17982 AGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTAT-CTTG 18040 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 | | |||| |||| | | | || || ||| ||| || || | |||||||| Sbjct 18041 AATCTTTGCCTTGACATTATCAATAGTATCCGAGCT---TTCAACCTCCAAAGTGATGGT 18097 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || | || |||||||| || ||||| Sbjct 18098 TTTCCCTGTCAAAGTTTTTACAAAAATCTGCAT 18130 >seq16006 Length=16259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||||||||| ||| ||||| || ||||| || ||||| |||| | || || Sbjct 13243 ACCAAATGCAATGTGGACTCTTTTTGGATGTTGTAGTCGGCCAGGGTCCTGCCATCCTCG 13184 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC-GGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||| ||||| || || | | |||||||| ||| || | || || || || Sbjct 13183 AGTTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGCGGGATCCCT-TCTTTATCTTG 13125 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 ||| ||| |||| ||| | | | ||||| ||| ||| || || | ||||||| Sbjct 13124 GATCTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCT---TTCGACCTCCAAAGTGATGG 13069 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || | ||||| || ||||||||||| Sbjct 13068 TCTTCCCTGTCAAAGTCTTGACGAAGATTTGCAT 13035 >seq8889 Length=9065 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||| || ||||| | || || | || ||||| || || Sbjct 2262 CTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGTCCATCTTCCAATTGTTTACCGGCAAA 2203 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | ||||||||| | ||| | | |||||| ||| ||| | || | |||| Sbjct 2202 GATGAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCC-TGAATCTTGGCCTTGACAT 2144 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || || ||||| || | ||||||||||| || || | || || | Sbjct 2143 TGTCAATAGTATCAGAAGACTCCACCTCCAAAGTGATGGTTTTTCCTGTCAAAGTTTTAA 2084 Query 42196 CAAAGATTTGCATT 42209 |||| || |||||| Sbjct 2083 CAAA-ATCTGCATT 2071 >seq5280 Length=29361 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||||||||| || || || |||| || |||||||| ||||| || Sbjct 6735 CTCTTTCTGGATGTTGTAATCAGCAAGGGTACGTCCGTCCTCAAGCTGCTTGCCAGCAAA 6676 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | | ||||||||| | || | || ||||||||| ||| || || | | Sbjct 6675 AATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTAACATT 6616 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || || | ||||||||||| || || | ||||| Sbjct 6615 ATCGATTGTGTCAGAGCTC---TCGACCTCCAAAGTGATGGTTTTCCCTGTCAAAGTCTT 6559 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 6558 GACAAAGATCTGCAT 6544 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| | ||| | ||| |||||| |||||||||||||| || || || || | Sbjct 6987 ACGGAGCACAAGATGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCAAGTGTACGTCC 6928 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | || || |||||||| || | | |||||| || | ||| | | |||||| Sbjct 6927 ATCTTCCAATTGTTTCCCAGCGAAGATCAACCTCTGCTGATCTGGTGGGATCCCCTCCTT 6868 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| | || | |||| | | | ||| || || ||||| || | |||| Sbjct 6867 ATCC-TGAATCTTGGCCTTGACATTGTCAATCGTATCAGAAGACTCCACCTCCAAAGTGA 6809 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || || | ||||| ||||| || ||||| Sbjct 6808 TGGTTTTCCCTGTCAAGGTCTTCACAAAAATCTGCAT 6772 >seq1845 Length=6980 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| || |||| |||| | || || ||||||||||||||||| Sbjct 3782 CTCCTTTTGGATGTTGTAGTCTGCCAAGGTCCTGCCATCCTCAAGCTGCTTACCAGCGAA 3841 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | | |||||| || | || | | ||||||||| ||| || |||| ||| Sbjct 3842 AATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGT 3900 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| ||| ||| || || | |||||||| || || || | ||||| Sbjct 3901 TGTCAATGGTGTCAGAGCT---TTCGACCTCCAAAGTGATGGTCTTTCCGGTCAACGTCT 3957 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||| ||||| Sbjct 3958 TGACGAAGATCTGCAT 3973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543076487538000