Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4586 114 1e-20 seq8384 113 4e-20 seq7910 113 4e-20 seq4675 113 4e-20 seq13411 105 7e-18 seq5340 105 7e-18 seq13106 98.7 1e-15 seq8473 98.7 1e-15 seq16550 93.3 4e-14 seq10926 87.8 2e-12 >seq4586 Length=18721 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||| | || || || | | | || ||||| |||||||||||||| Sbjct 13881 CCACCCCTCAAACGAAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGCA 13940 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| || ||||| |||| | |||| || | ||| || || || || Sbjct 13941 AGGGTACGACCGTCCTCAAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 14000 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | ||| |||| || | |||||| | ||||| Sbjct 14001 ATCCCTTCTTTGTC-TTGAATCTTGGCCTTAACATTG-TCAATGGTGTCAGAGCTCTCCA 14058 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || ||||||| |||||| ||||| |||||||| Sbjct 14059 CCTCGAGAGTGATGGTCTTTCCAGTCAAAGTTTTCACAAATATCTGCAT 14107 >seq8384 Length=24589 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| | ||| | | ||| | ||| | | |||| ||||||||||||||||| ||| | Sbjct 3584 CCGCCCCTCAACCTGAGAACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAATCGGCC 3525 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || || || | | |||| | | ||| ||||| || || Sbjct 3524 AAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGG 3465 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| || | | || | ||||| | ||| || Sbjct 3464 ATCCCTTCTTTGTCTTGGATTTTCGCCTTAACATTATCGATAGTGTCAGAGCTCTCGACT 3405 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||||||||||| ||||| || ||||| |||||||| Sbjct 3404 TCGAGAGTGATGGTTTTACCAGTAAGAGTCTTAACAAAGATCTGCAT 3358 >seq7910 Length=9655 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| | ||| | | ||| | ||| | | |||| ||||||||||||||||| ||| | Sbjct 1820 CCGCCCCTCAACCTGAGAACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAATCGGCC 1761 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || || || | | |||| | | ||| ||||| || || Sbjct 1760 AAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1701 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| || | | || | ||||| | ||| || Sbjct 1700 ATCCCTTCTTTGTCTTGGATTTTCGCCTTAACATTATCGATAGTGTCAGAGCTCTCGACT 1641 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||||||||||| ||||| || ||||| |||||||| Sbjct 1640 TCGAGAGTGATGGTTTTACCAGTAAGAGTCTTAACAAAGATCTGCAT 1594 >seq4675 Length=16269 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| | ||| | | ||| | ||| | | |||| ||||||||||||||||| ||| | Sbjct 15971 CCGCCCCTCAACCTGAGAACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAATCGGCC 15912 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || || || | | |||| | | ||| ||||| || || Sbjct 15911 AAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGG 15852 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| || | | || | ||||| | ||| || Sbjct 15851 ATCCCTTCTTTGTCTTGGATTTTCGCCTTAACATTATCGATAGTGTCAGAGCTCTCGACT 15792 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||||||||||| ||||| || ||||| |||||||| Sbjct 15791 TCGAGAGTGATGGTTTTACCAGTAAGAGTCTTAACAAAGATCTGCAT 15745 >seq13411 Length=19963 Score = 105 bits (116), Expect = 7e-18 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG-CT 138446 ||||| || ||||| || || ||||| | | || || ||||| || ||||||||| || Sbjct 11488 CCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCT 11429 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || | ||| || |||||||| || | | |||||| ||| |||||||| || || Sbjct 11428 AAT-GTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGG 11370 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||||||||| ||| | || | ||| |||| || | ||||||| || || Sbjct 11369 GATGCCTTCTTTGTC-TTGAATCTTGGCTTTCACATTG-TCGATTGTGTCGGAGGATTCG 11312 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | ||||| || || | |||||||| || |||||||| Sbjct 11311 ACTTCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 11262 >seq5340 Length=22833 Score = 105 bits (116), Expect = 7e-18 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG-CT 138446 ||||| || ||||| || || ||||| | | || || ||||| || ||||||||| || Sbjct 14263 CCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCT 14322 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || | ||| || |||||||| || | | |||||| ||| |||||||| || || Sbjct 14323 AAT-GTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGG 14381 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||||||||| ||| | || | ||| |||| || | ||||||| || || Sbjct 14382 GATGCCTTCTTTGTC-TTGAATCTTGGCTTTCACATTG-TCGATTGTGTCGGAGGATTCG 14439 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | ||||| || || | |||||||| || |||||||| Sbjct 14440 ACTTCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 14489 >seq13106 Length=76417 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || | ||| | | |||||||| || |||||||||||| Sbjct 56355 GCCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 56296 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||| ||||| || || |||| |||| ||||| || ||||| || || Sbjct 56295 GAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGTGG 56236 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||||| ||||| || Sbjct 56235 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCGGAAGACTCAAC 56176 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | ||| || || || || ||||| || || ||||||||| Sbjct 56175 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATG 56127 >seq8473 Length=8692 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || | ||| | | |||||||| || |||||||||||| Sbjct 5353 GCCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 5412 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||| ||||| || || |||| |||| ||||| || ||||| || || Sbjct 5413 GAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGTGG 5472 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||||| ||||| || Sbjct 5473 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCGGAAGACTCAAC 5532 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | ||| || || || || ||||| || || ||||||||| Sbjct 5533 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATG 5581 >seq16550 Length=20979 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | |||||||||||||||||||| || Sbjct 17904 CCACCACGAAGACGAAGAACCAAATGCAGAGTCGACTCCTTTTGAATGTTGTAATCAGCA 17963 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| || || || || | | |||| || | ||||||||| || || Sbjct 17964 AGGGTACGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGG 18023 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | |||| || | | || | || || | || || Sbjct 18024 ATCCCTTCCTTATC-TTGAATCTTTGCCTTGACATTATCAATAGTATCCGAGCTTTCAAC 18082 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || |||| ||||||||||||||||||||| Sbjct 18083 CTCCAAAGTGATGGTTTTCCCTGTCAAAGTTTTTACAAAAATCTGCAT 18130 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| |||| || || || | | | |||||||| || ||||||||||| | Sbjct 17448 CCACCCCTCAACCGCAGTACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 17507 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||||| || ||||||||||| || | | |||| || | || ||||| || || Sbjct 17508 AAAGTACGCCCATCTTCGAGTTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 17567 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || |||||||| || ||| | || | || |||| || | || || | || | Sbjct 17568 ATTCCTTCTTTATC-CTGAATCTTAGCCTTGACATTG-TCAATCGTATCAGAACTTTCAA 17625 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| || |||| || || |||||||||||||| Sbjct 17626 CCTCTAAAGTGATTGTTTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 17674 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| | ||| || | ||| | | |||| ||||||||||| |||||||| | Sbjct 18360 CCTCCCCTCAACCTCAACACAAGATGGAGGGTTGATTCCTTTTGAATATTGTAGTCTGCC 18419 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | |||||||| || || || | | |||| | | || || || || || Sbjct 18420 AGGGTCCTGCCA-TCCTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCTGGGGG 18478 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| || |||| | ||| | || | ||||| | ||| || Sbjct 18479 GATACCTTCTTTGTC-TTGGATTTTGGCCTTACATTATCGATAGTGTCAGAGCTCTCGAC 18537 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAATAT 138626 |||| || | || ||||| || ||||| || ||||| |||||||| |||| ||| Sbjct 18538 TTCGAGAGTGATGGTCTTACCCGTGAGAGTCTTAACAAAGATCTGCATATTCTATATTAT 18597 Query 138627 TA 138628 || Sbjct 18598 TA 18599 >seq10926 Length=11099 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| |||| || || || | | | |||||||| || ||||||||||| | Sbjct 8028 CCACCCCTCAACCGCAGTACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 8087 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||||| || ||||||||||| || | | |||| || | || ||||| || || Sbjct 8088 AAAGTACGCCCATCTTCGAGTTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 8147 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || |||||||| || ||| | || | || |||| || | || || | || | Sbjct 8148 ATTCCTTCTTTATC-CTGAATCTTAGCCTTGACATTG-TCAATCGTATCAGAACTTTCAA 8205 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| || |||| || || |||||||||||||| Sbjct 8206 CCTCTAAAGTGATTGTTTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 8254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496137869154000