Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq12084 87.8 2e-12 >seq12084 Length=12162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCA-TTCGCGGG 12850 || |||||||| |||||||| | |||||||||||||| || | |||||| ||| Sbjct 7426 AAACCATCCATTTCAGTCAACAACTGATTGATGGTTTGCTCCCTCTCATCATTTCCACCT 7367 Query 12851 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 | || |||||| | | ||| | || || ||||| || || |||||||| || ||||| Sbjct 7366 CCTA-AACCCGCCCCTCTCTGCCTCCCCACTGCGTCTATCTCATCAATGAATACAATACA 7308 Query 12911 CGGTTGATTTTCA-CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || || |||| | || |||||| | ||| | || || ||||| ||||||| Sbjct 7307 AGG-TGCTTTTGATTTCGCCTTTTCAAACAAATCCCTAACCCTAGATGCACCAACACCCA 7249 Query 12970 CAAACATCTCCACAAA 12985 |||||| ||| ||||| Sbjct 7248 CAAACAACTCAACAAA 7233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613353248037000