Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq13411 123 2e-23 seq5340 123 2e-23 seq16006 98.7 7e-16 seq16550 95.1 8e-15 seq8889 84.2 2e-11 >seq13411 Length=19963 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || ||||| | |||||||| | |||| ||||||||| ||||| || ||||| Sbjct 11488 CCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCT 11429 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | || || | |||||| || |||| |||||||| || || || | || Sbjct 11428 AATGTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGG 11369 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||||||| | || || | | || |||| | |||||| | | ||| | Sbjct 11368 ATGCCTTCTTTGTCTTGAATCTTGGCTTTCACATTGTCG--ATTGTGTCGGAGGATTCGA 11311 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || |||||||| || ||||| |||||||||||||||||||| Sbjct 11310 CTTCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 11262 >seq5340 Length=22833 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || ||||| | |||||||| | |||| ||||||||| ||||| || ||||| Sbjct 14263 CCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCT 14322 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | || || | |||||| || |||| |||||||| || || || | || Sbjct 14323 AATGTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGG 14382 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||||||| | || || | | || |||| | |||||| | | ||| | Sbjct 14383 ATGCCTTCTTTGTCTTGAATCTTGGCTTTCACATTGTCG--ATTGTGTCGGAGGATTCGA 14440 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || |||||||| || ||||| |||||||||||||||||||| Sbjct 14441 CTTCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 14489 >seq16006 Length=16259 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| |||||||||||||| ||| |||||||| || || || |||||| Sbjct 13261 CCACCACGGAGACGGAGTACCAAATGCAATGTGGACTCTTTTTGGATGTTGTAGTCGGCC 13202 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| || | ||| || || ||||||| || | ||||| || | || Sbjct 13201 AGGGTCCTGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGCGGG 13142 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||||| || || ||| || | ||| | | | ||||| | |||||| || Sbjct 13141 ATCCCTTCTTTATCTTGGATCTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTCGAC 13083 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || ||||| || |||||||| ||||| Sbjct 13082 CTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTGACGAAGATTTGCAT 13035 >seq16550 Length=20979 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| |||| ||| ||| || || || |||||||| ||| Sbjct 18132 CCACCACGAAGACGAAGGACCAAGTGCAGAGTTGATTCCTTCTGGATGTTATAATCTGCC 18191 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | |||| || | ||| || || ||||||| || | |||||| || | || Sbjct 18192 AAGGTCCTGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGG 18251 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || || || |||| | | | |||||||| |||||| || Sbjct 18252 ATCCCTTCCTTATCTTGAATCTTCGCCTTAACATTATCGATTGTGTCTGAGCTTTCGACC 18311 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || || || || || ||||||||||| Sbjct 18312 TCCAAAGTAATGGTCTTTCCTGTCAACGTCTTGACAAAGATCTGCAT 18358 >seq8889 Length=9065 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||| ||| | || || || || || |||||||||||| Sbjct 2070 CCACCACGAAGACGAAGAACCAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCGGCC 2011 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| || | ||||| || ||||||| || | |||||| || | || Sbjct 2010 AAAGTACGTCCATCCTCAAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGA 1951 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || || || || | ||| | | | || || | ||| || || Sbjct 1950 ATTCCTTCCTTATCTTGGATCTTAGCCTTGA-CGTTGTCAATGGTATCAGAGCTCTCAAC 1892 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || ||||| ||||| || || || || ||||||||||| Sbjct 1891 CTCCAAAGTGATGGTTTTTCCCGTCAATGTCTTCACAAAGATCTGCAT 1844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347284611142475