Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq14165 87.8 2e-12 seq4091 87.8 2e-12 >seq14165 Length=56756 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| || || ||||||| ||| | || || | || || ||| ||| ||||||||| Sbjct 34935 GAAAGACCTCAACACATGTTAATGAGAGTTGCTGTTGGGATTCATAAGGATGATATTGAT 34876 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725 |||||| | |||||||| || |||||| | | ||||| ||| ||| | || ||| Sbjct 34875 TCTGTTCTCAAGACATACCACTTGATGTCACAGAGATGGTTCACCCATGCATCTCCCACC 34816 Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAG-TTGTTT 111769 || ||||| || || |||||||| || ||| | | || |||||| Sbjct 34815 CTTTTCAATGCCGGAACACCAAGGCCTCAAGTATGAAGATTGTTT 34771 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 112526 AACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGC 112585 |||||| |||| || || |||| | | ||||||| |||| |||||| ||||| ||||| Sbjct 32870 AACTGTTACAACGAATCTGAACAAAATCATTGATATGAATTATTACCCTGTTGAAACTGC 32811 Query 112586 TCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGT 112645 | ||| ||| | ||||| | || |||||| | || ||||||||||| || ||| Sbjct 32810 AAAAACATCAAATCTTCGACACAGGCCTATTGGTATTGGGGTCCAAGGTCTTGCAGATAC 32751 Query 112646 ATTCATTCTTTGTCGCCA-CGCATTTGATTCC 112676 |||| |||| | | | |||||||||||| Sbjct 32750 TTTCA-TCTTGCTTGGTATGGCATTTGATTCC 32720 >seq4091 Length=20028 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| || || ||||||| ||| | || || | || || ||| ||| ||||||||| Sbjct 16652 GAAAGACCTCAACACATGTTAATGAGAGTTGCTGTTGGGATTCATAAGGATGATATTGAT 16593 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725 |||||| | |||||||| || |||||| | | ||||| ||| ||| | || ||| Sbjct 16592 TCTGTTCTCAAGACATACCACTTGATGTCACAGAGATGGTTCACCCATGCATCTCCCACC 16533 Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAG-TTGTTT 111769 || ||||| || || |||||||| || ||| | | || |||||| Sbjct 16532 CTTTTCAATGCCGGAACACCAAGGCCTCAAGTATGAAGATTGTTT 16488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620586632454000