Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq14165 116 4e-21 seq4091 116 4e-21 seq12084 91.5 2e-13 >seq14165 Length=56756 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| || |||||||| ||||| || | ||| || ||||| | || Sbjct 34787 TGAGGCCTTGGTGTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGT 34846 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| || |||||||| | ||||||||||| || ||| || || || | || Sbjct 34847 GACATCAAGTGGTATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCA 34906 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-A 107346 || | ||| ||||||| ||| ||| |||| | | | |||| || | ||||| | Sbjct 34907 ACTCTCATTAACATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAA 34966 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | || ||||||||||||||| ||||||| || || | ||| ||||||| Sbjct 34967 GATC-TCTCAAGGGTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCG 35013 >seq4091 Length=20028 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| || |||||||| ||||| || | ||| || ||||| | || Sbjct 16504 TGAGGCCTTGGTGTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGT 16563 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| || |||||||| | ||||||||||| || ||| || || || | || Sbjct 16564 GACATCAAGTGGTATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCA 16623 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-A 107346 || | ||| ||||||| ||| ||| |||| | | | |||| || | ||||| | Sbjct 16624 ACTCTCATTAACATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAA 16683 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | || ||||||||||||||| ||||||| || || | ||| ||||||| Sbjct 16684 GATC-TCTCAAGGGTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCG 16730 >seq12084 Length=12162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 |||||||||||| || ||||| | || || || ||||| |||| |||||||| | Sbjct 7427 AAAACCATCCATTTCAGTCAACAACTGATTGATGGTTTGCTCCCTCTCATCATTTCCACC 7368 Query 9341 -CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | || ||| || | | ||| | ||||| || || |||||||||||||| ||||||| Sbjct 7367 TCCTAA-ACCCGCCCCTCTCTGCCTCCCCACTGCGTCTATCTCATCAATGAATACAATAC 7309 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | ||| ||| || ||||||| | ||| | |||||| || || ||||| | Sbjct 7308 AAGGTGCTTTTGATTTCGCCTTTTCAAACAAATCCCTAACCCTAGATGCACCAACACCCA 7249 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| ||| ||||| | | || | ||| | || || ||| || || || | Sbjct 7248 CAAACAACTCAACAAATTCAGAAGCAGCACACGAAAAAAATGGCACACCAGCCTCCCCTG 7189 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| |||| || | || |||||||| || || || Sbjct 7188 CAACCGCTCTAGCTAACAGGGTCTTACCGGTTCCAGG 7152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589832751693000