Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq20014 590 7e-164 seq2978 486 2e-132 seq2990 410 1e-109 seq18988 93.3 5e-14 >seq20014 Length=5322 Score = 590 bits (654), Expect = 7e-164 Identities = 723/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| ||||| | ||| | ||||| |||| ||||| || || || Sbjct 1920 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTG 1861 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || |||||||| || Sbjct 1860 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTCC 1802 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | ||||||||||| Sbjct 1801 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1742 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || ||||| || |||| |||| || || ||| | || || |||||||| Sbjct 1741 TATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAAT 1682 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||||| | | ||||| |||||||| |||||||||||||| | | | | Sbjct 1681 ATGGGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 1622 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || ||||||||| | |||||||| | | | | Sbjct 1621 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1562 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| |||||||||| |||||| |||||||| || || | || || ||| Sbjct 1561 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGC 1502 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | |||||| ||||||| || || ||||||||||||||||||||||| Sbjct 1501 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 1442 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 |||||| || |||||||||||| | |||||||| || ||||||||||| |||||||| || Sbjct 1441 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1382 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| ||| ||||| ||| | ||||| || || ||||| || |||||||| Sbjct 1381 ATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 1322 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| || || || || | |||||| ||| | || Sbjct 1321 TTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGG 1262 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| |||||||||||||||||||| |||||||| || || || || || || || || Sbjct 1261 TTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGG 1202 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| |||||||| ||||| |||||||||||||| | | | || ||||||||||| Sbjct 1201 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGC 1142 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | ||||| || || | |||||| | || ||||| ||||| Sbjct 1141 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAA 1082 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 | | || || || || || ||||||||||| || ||| | | || | ||| || Sbjct 1081 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACAC 1022 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| || Sbjct 1021 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 962 Query 169450 TCACAACTTCCCACTAGACTTAGC 169473 |||||| ||||| ||||||||||| Sbjct 961 TCACAATTTCCCTCTAGACTTAGC 938 >seq2978 Length=1535 Score = 486 bits (538), Expect = 2e-132 Identities = 657/903 (73%), Gaps = 13/903 (1%) Strand=Plus/Plus Query 168583 TTTCATTGTTGCATTTATTGCTG-CACCACCTGTCGATATCGAC-GGAATCA-GAGAACC 168639 ||| ||| | || || ||||||| | || || || ||||| || || || | | ||||| Sbjct 10 TTTTATTATCGCCTTCATTGCTGACTCCTCCAGTAGATATTGATAGGTATTACGTGAACC 69 Query 168640 TG---TAGCAGGTGCTCTAA--TGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCA 168694 | | | || |||| | | ||||||| ||| || || || ||||| || |||| Sbjct 70 TAGTTTTACTGGATCTCTTACTTTTATGGAA-CAATATTATTTCGGGTGCCATTATTCCT 128 Query 168695 TCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAG-CAGCTACAATCGA-TG 168752 |||| || || ||| | || || |||||||| ||||||| |||| | | || || Sbjct 129 ACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGGCAGCATCTGTTGAATG 188 Query 168753 AGTGGTTATATAAT-GGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATC 168811 | |||||||| ||| ||||||||||| | | | | | |||||| || | || | Sbjct 189 AATGGTTATACAATAGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 248 Query 168812 TCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATC 168871 || ||||||||| | |||||||| | | | | || |||||| |||||||||| Sbjct 249 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATT 308 Query 168872 TGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTT 168931 |||||| |||||||| || || | || || ||| || ||| | | |||||| || Sbjct 309 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATT 368 Query 168932 GGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATG 168991 ||||| || || ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 369 GGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATG 428 Query 168992 TTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCA 169051 | |||||||| || ||||||||||| |||||||| || || || ||| ||| ||||| Sbjct 429 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCT 488 Query 169052 GGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTA 169111 ||| | ||||| || || ||||| || ||||||||||| | ||||| ||| | | Sbjct 489 GGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 548 Query 169112 ATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAA 169171 ||||| || || || || | |||||| ||| | ||||||| ||||||||||||||| Sbjct 549 ATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAA 608 Query 169172 GAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCA 169231 ||||| |||||||| || || || || || || || || |||| |||||||| ||||| Sbjct 609 GAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCT 668 Query 169232 AGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTA 169291 |||||||||||||| | | | || ||||||||||| | | || || ||| || | Sbjct 669 AGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 728 Query 169292 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAAC 169351 ||||| || || | |||||| | || ||||| |||||| | || || || || || ||| Sbjct 729 TGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 788 Query 169352 CAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGA 169411 |||||||| || ||| | | || | ||| || |||| ||| | ||||| | Sbjct 789 CAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAACCGT 848 Query 169412 GCAAACCTTGGTATGGAAGTAATGC-ATGAGCGTAACGCTCACAACTTCCCACTAGACTT 169470 || ||||||||||||||||| |||| |||| ||||| |||||||| ||||| |||||||| Sbjct 849 GCTAACCTTGGTATGGAAGTTATGCAATGAACGTAATGCTCACAATTTCCCTCTAGACTT 908 Query 169471 AGC 169473 ||| Sbjct 909 AGC 911 >seq2990 Length=15620 Score = 410 bits (454), Expect = 1e-109 Identities = 517/706 (73%), Gaps = 3/706 (0%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| ||||| | ||| | ||||| |||| ||||| || || || Sbjct 14830 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTG 14889 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || |||||||| || Sbjct 14890 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTCC 14948 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | ||||||||||| Sbjct 14949 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 15008 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || ||||| || |||| |||| || || ||| | || || |||||||| Sbjct 15009 TATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAAT 15068 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||||| | | ||||| |||||||| |||||||||||||| | | | | Sbjct 15069 ATGGGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 15128 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGG-AATTATCATACA 168848 | |||||| || | || | || ||||||||| | |||||| || | | | Sbjct 15129 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGGAACTTAGTTTCC 15188 Query 168849 GACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTG 168908 | || |||||| |||||||||| |||||| |||||||| || || | || || || Sbjct 15189 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 15248 Query 168909 CAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAA 168968 | || ||| | | |||||| ||||||| || || |||||||||||||||||||||| Sbjct 15249 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 15308 Query 168969 TTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATC 169028 ||||||| || |||||||||||| | |||||||| || ||||||||||| |||||||| | Sbjct 15309 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 15368 Query 169029 CCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATG 169088 | || || ||| ||| ||||| ||| | ||||| || || ||||| || ||||||| Sbjct 15369 CATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 15428 Query 169089 GTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATG 169148 |||| | ||||| ||| | | ||||| || || || || | |||||| ||| | | Sbjct 15429 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAG 15488 Query 169149 GTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGC 169194 |||||| |||||||||||||||||||| |||||||| || || || Sbjct 15489 GTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGC 15534 >seq18988 Length=14164 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450 |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| ||| Sbjct 7909 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 7968 Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGAGACTACAGA 169491 ||||| ||||| ||||||||||| || ||| || |||| Sbjct 7969 CACAATTTCCCTCTAGACTTAGCTGCTATTGAAGCTCCAGA 8009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564299960436000