Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq20014 518 5e-142 seq2978 446 2e-120 seq2990 361 8e-95 >seq20014 Length=5322 Score = 518 bits (574), Expect = 5e-142 Identities = 698/972 (72%), Gaps = 0/972 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| |||| |||||||| || | ||||| ||| | | | | Sbjct 1899 ACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTTATTGACC 1840 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 1839 GCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 1780 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||||| || || || ||||| || | Sbjct 1779 CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCGGGTGCCATTATT 1720 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || || || ||||| || |||||||||||| | ||||| Sbjct 1719 CCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTGTTGAT 1660 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||||||||| |||| |||| || | | |||||| | ||||| | Sbjct 1659 GAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1600 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | | | |||||| |||||||||| Sbjct 1599 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATT 1540 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| ||| || ||| | | || ||| | Sbjct 1539 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATT 1480 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || || ||||||| |||||| || ||||| ||||| || ||||||| |||| Sbjct 1479 GGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATG 1420 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||||||||||||||| || ||||||||||| |||||| |||| || ||| Sbjct 1419 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCT 1360 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | || ||| ||||| ||||| | || || ||| | | Sbjct 1359 GGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 1300 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| ||| | ||||||| ||||| ||||| || Sbjct 1299 ATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAA 1240 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || |||||||| || |||||||| ||||| || | ||||||||||| || Sbjct 1239 GAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCT 1180 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 |||||||||||| | | | || |||||||| || || | ||||| | ||||| Sbjct 1179 AGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 1120 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| || |||||||| |||||||| || |||||||| |||||| Sbjct 1119 TGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 1060 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || || || || || || || ||| |||||||| || | ||||| | Sbjct 1059 CAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAACCGT 1000 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| ||||| || ||||| |||||||| ||||| ||||||| Sbjct 999 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGACTTA 940 Query 216275 GCTGCTGCTGAA 216286 |||||| |||| Sbjct 939 GCTGCTATTGAA 928 >seq2978 Length=1535 Score = 446 bits (494), Expect = 2e-120 Identities = 649/903 (72%), Gaps = 13/903 (1%) Strand=Plus/Plus Query 215396 GCATTCATCGCTG-CACCTCCTGTCGATATCGAC-GGAATCA-GAGAGCC-AGTTG--CT 215449 || ||||| |||| | ||||| || ||||| || || || | | || || |||| || Sbjct 20 GCCTTCATTGCTGACTCCTCCAGTAGATATTGATAGGTATTACGTGAACCTAGTTTTACT 79 Query 215450 GGTTCTTTAA--TGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACG 215507 || ||| | | | ||||| ||||| || || || ||||| || | |||| ||| | Sbjct 80 GGATCTCTTACTTTTATGG-AACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAG 138 Query 215508 CAATCGGATTACACTTCTACCCTATCTGGGAAG-CAGCAACAGTTGAC-GAATGGCTCTA 215565 | || || || || || ||||| || ||||||| ||||| | ||||| |||||| | || Sbjct 139 CTATAGGTTTGCATTTTTACCCAATATGGGAAGGCAGCATCTGTTGAATGAATGGTTATA 198 Query 215566 CAAT-GGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACT 215624 |||| ||||| |||| |||| || | | |||||| | ||||| | || ||| Sbjct 199 CAATAGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACA 258 Query 215625 GCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTT 215684 || | ||||||||||| || | | | |||||| |||||||||| |||||| | Sbjct 259 TGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCAT 318 Query 215685 ACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTT 215744 | || || ||||| | ||||| ||| || ||| | | || ||| | ||||| || Sbjct 319 ATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAA 378 Query 215745 CTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCC 215804 || ||||||| |||||| || ||||| ||||| || ||||||| |||| |||| |||| Sbjct 379 GCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCC 438 Query 215805 AGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCG 215864 |||||||||||||||| || ||||||||||| |||||| |||| || |||||||| |||| Sbjct 439 AGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCG 498 Query 215865 GTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGA 215924 | || || | || ||| ||||| ||||| | || || ||| | | ||||| || | Sbjct 499 GCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAA 558 Query 215925 CAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACA 215984 | || || | |||||| ||| | ||||||| ||||| ||||| || ||||| || | Sbjct 559 CCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATA 618 Query 215985 ACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACA 216044 | |||||||| || |||||||| ||||| || | ||||||||||| || |||||||| Sbjct 619 ATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACA 678 Query 216045 ACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTG 216104 |||| | | | || |||||||| || || | ||||| | |||||||| |||| Sbjct 679 ACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTG 738 Query 216105 CAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCG 216164 | | ||| || |||||||| |||||||| || |||||||| |||||||| || || | Sbjct 739 CTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAG 798 Query 216165 TAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTG 216224 | || || || ||| |||||||| || | ||||| | || |||| Sbjct 799 TTGATAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACCTTG 858 Query 216225 GTATGGAAGTAATGC-ACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCT 216283 |||||||||| |||| | || ||||| |||||||| ||||| ||||||| |||||| | Sbjct 859 GTATGGAAGTTATGCAATGAACGTAATGCTCACAATTTCCCTCTAGACTTAGCTGCTATT 918 Query 216284 GAA 216286 ||| Sbjct 919 GAA 921 >seq2990 Length=15620 Score = 361 bits (400), Expect = 8e-95 Identities = 505/704 (72%), Gaps = 3/704 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| |||| |||||||| || | ||||| ||| | | | | Sbjct 14851 ACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTTATTGACC 14910 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 14911 GCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 14970 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||||| || || || ||||| || | Sbjct 14971 CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCGGGTGCCATTATT 15030 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || || || ||||| || |||||||||||| | ||||| Sbjct 15031 CCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTGTTGAT 15090 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||||||||| |||| |||| || | | |||||| | ||||| | Sbjct 15091 GAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 15150 Query 215615 TCTGCATACTGCGGAAGACAGTGGG-AACTTTCTTACAGATTAGGTATGAGACCTTGGAT 215673 || ||| || | |||||| ||||| || | | | |||||| |||||||||| Sbjct 15151 GCTTGTTACATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 15210 Query 215674 CTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATT 215733 |||||| || || || ||||| | ||||| ||| || ||| | | || ||| | Sbjct 15211 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAAT 15270 Query 215734 CGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACAT 215793 ||||| || || ||||||| |||||| || ||||| ||||| || ||||||| ||| Sbjct 15271 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCAT 15330 Query 215794 GTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGC 215853 | |||| |||||||||||||||||||| || ||||||||||| |||||| |||| || || Sbjct 15331 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGC 15390 Query 215854 TGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCT 215913 |||||| ||||| || || | || ||| ||||| ||||| | || || ||| | | Sbjct 15391 TGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTT 15450 Query 215914 AATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGA 215973 ||||| || || || || | |||||| ||| | ||||||| ||||| ||||| || Sbjct 15451 GATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGA 15510 Query 215974 GGAAACATACAACATCGTAGCTGCAC-ACGG-TTACTTTGGTCG 216015 ||||| || || |||||||| || | |||| ||| ||||| || Sbjct 15511 AGAAACTTATAATATCGTAGCCGCTCTACGGTTTATTTTGGCCG 15554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744894631086000