Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq20014 531 6e-146 seq2978 453 1e-122 seq2990 351 1e-91 >seq20014 Length=5322 Score = 531 bits (588), Expect = 6e-146 Identities = 702/974 (72%), Gaps = 0/974 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| || || ||||||||||| Sbjct 1911 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCT 1852 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | || ||||| || ||||| || || || Sbjct 1851 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGAT 1792 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | ||||| ||||| || || || Sbjct 1791 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCG 1732 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | || || || || || ||||||||| Sbjct 1731 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCA 1672 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||| ||||| || || |||||||||||| || || || | | |||||| Sbjct 1671 GCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTC 1612 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | |||||||||| | |||| | |||||| Sbjct 1611 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 1552 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 1551 CGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTG 1492 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || | ||||| ||| || || || || ||||||||||| || || ||||| Sbjct 1491 ATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACT 1432 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||||||| | |||||||| || ||||||||||| |||||||||||||| || ||| Sbjct 1431 TTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATG 1372 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || || || ||||| ||||| | ||| Sbjct 1371 CTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTA 1312 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || ||| | || |||| |||| Sbjct 1311 ACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTC 1252 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || |||||||||||||| || || || || || || || || || ||||| || | ||| Sbjct 1251 GGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATC 1192 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| |||| | | || |||||||| ||| | | ||| Sbjct 1191 TTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCT 1132 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | |||||||| ||| | | ||||| |||| ||||| || ||||| ||||| Sbjct 1131 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGT 1072 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| ||| | || ||| | || ||| || || ||||| || Sbjct 1071 TTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACACTTGGGCTGAT 1012 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 | ||||| | || ||||| ||||||||||| |||||||| |||||||| ||||| ||| Sbjct 1011 ATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTC 952 Query 170659 CCACTTGACTTGGC 170672 || || ||||| || Sbjct 951 CCTCTAGACTTAGC 938 >seq2978 Length=1535 Score = 453 bits (502), Expect = 1e-122 Identities = 596/819 (73%), Gaps = 5/819 (1%) Strand=Plus/Plus Query 169858 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCAC 169917 ||||| ||||| || || || ||||| || |||| |||| || || ||| | || Sbjct 94 TATGG-AACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCAT 152 Query 169918 TTCTATCCTATTTGGGAAG-CAGCAACTCTAGA-TGAGTGGTTGTATAAC-GGTGGTCCT 169974 || || || || ||||||| ||||| || | || ||| ||||| || || ||||||||| Sbjct 153 TTTTACCCAATATGGGAAGGCAGCATCTGTTGAATGAATGGTTATACAATAGGTGGTCCT 212 Query 169975 TATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGG 170034 ||| || || || | | |||||| | | || | || ||||||||| | ||||| Sbjct 213 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 272 Query 170035 GAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTG 170094 ||||| | |||| | |||||||| |||||||| ||| |||||||| ||||| || Sbjct 273 GAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 332 Query 170095 TCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGA 170154 |||| || ||||| ||||| | || || | ||||| ||| || || || || Sbjct 333 GCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGT 392 Query 170155 ATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAAC 170214 ||||||||||| || || ||||| || ||||||||| | |||||||| || ||||||||| Sbjct 393 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 452 Query 170215 ATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTC 170274 || |||||||||||||| || ||| ||| || |||||| | ||||| || | || || Sbjct 453 ATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTT 512 Query 170275 TCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAG 170334 || ||||| ||||| | ||||| ||| | | ||||| || || ||||| || || Sbjct 513 AGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAA 572 Query 170335 TCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCA 170394 || ||| | || |||| |||||| |||||||||||||| || || || || || || Sbjct 573 TCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCT 632 Query 170395 CATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTT 170454 || || || ||||| || | ||||||||||||||||| || ||||| |||| | | Sbjct 633 CACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTA 692 Query 170455 CACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGC 170514 || |||||||| ||| | | ||||||||| | |||||||| ||| | | ||||| || Sbjct 693 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGC 752 Query 170515 ACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGT 170574 || ||||| || ||||| ||||| || || |||||||| ||| | || ||| | || Sbjct 753 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGC 812 Query 170575 AAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATG 170634 ||| || || ||||| || | ||||| | || ||||| ||||||||||| ||| Sbjct 813 CGTGTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATG 872 Query 170635 C-ATGAGCGTAATGCACACAACTTCCCACTTGACTTGGC 170672 | |||| |||||||| ||||| ||||| || ||||| || Sbjct 873 CAATGAACGTAATGCTCACAATTTCCCTCTAGACTTAGC 911 >seq2990 Length=15620 Score = 351 bits (388), Expect = 1e-91 Identities = 496/696 (71%), Gaps = 1/696 (0%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| || || ||||||||||| Sbjct 14839 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCT 14898 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | || ||||| || ||||| || || || Sbjct 14899 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGAT 14958 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | ||||| ||||| || || || Sbjct 14959 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCG 15018 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | || || || || || ||||||||| Sbjct 15019 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCA 15078 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||| ||||| || || |||||||||||| || || || | | |||||| Sbjct 15079 GCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTC 15138 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGG-AACTATCATACCGTTTAGGTAT 170057 | | || | || ||||||||| | |||||| |||| | |||| | ||||| Sbjct 15139 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTAT 15198 Query 170058 GCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT 170117 ||| |||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 15199 GCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTT 15258 Query 170118 AGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTAC 170177 | || || | ||||| ||| || || || || ||||||||||| || || ||||| Sbjct 15259 GATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTAC 15318 Query 170178 ATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATAT 170237 || ||||||||| | |||||||| || ||||||||||| |||||||||||||| || || Sbjct 15319 TTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 15378 Query 170238 GGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGT 170297 | ||| || |||||| | ||||| || | || || || ||||| ||||| | || Sbjct 15379 GCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGT 15438 Query 170298 AACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATT 170357 ||| ||| | | ||||| || || ||||| || || || ||| | || |||| ||| Sbjct 15439 AACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATT 15498 Query 170358 CGGACAAGAAGAAGAAACATACAACATTGTTGCAGC 170393 ||| |||||||||||||| || || || || || || Sbjct 15499 CGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGC 15534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582701741580000