Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq20014 625 3e-174 seq2978 533 2e-146 seq2990 459 3e-124 >seq20014 Length=5322 Score = 625 bits (692), Expect = 3e-174 Identities = 724/973 (74%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| || || || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 950 GGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATG 1009 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| || || | |||||| ||| ||||| || | || ||||| || Sbjct 1010 ATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTACTGATTGGTTGAAATTG 1069 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || || Sbjct 1070 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 1129 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| | ||| || || | ||||||| |||||||| |||||| ||| Sbjct 1130 ACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 1189 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || |||||||| || || |||||||||||||| ||||||||| Sbjct 1190 AAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGA 1249 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | ||| || |||||||||| ||||| | ||| | | ||| Sbjct 1250 CCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 1309 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 1310 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCCT 1369 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 | ||||||||| || |||||||||||||| || || |||||||| |||| |||| ||||| Sbjct 1370 AGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 1429 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || || ||||| |||||||| || ||||| || | || || Sbjct 1430 AAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAG 1489 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| || Sbjct 1490 ATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 1549 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||||||| | | |||||| Sbjct 1550 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGT 1609 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| |||| |||||| |||||||| |||| |||||| || | | | Sbjct 1610 AAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACAGAT 1669 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 ||||||||||| || || || ||||| | ||| ||||| ||| | |||| | |||| Sbjct 1670 GCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCA 1729 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || ||||| || |||||||| || | ||||| |||| || || ||||| ||||| ||| Sbjct 1730 CCCGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 1789 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| ||| || || || || ||||| ||| || | | || Sbjct 1790 ATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA-AGTTGCGGTCAATAA 1848 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | |||||||| |||| || | |||||| | ||| ||| | Sbjct 1849 GGTAGGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTAT 1908 Query 84944 CCAATCACAGAAG 84956 ||| | ||||||| Sbjct 1909 CCAGTTACAGAAG 1921 >seq2978 Length=1535 Score = 533 bits (590), Expect = 2e-146 Identities = 661/891 (74%), Gaps = 13/891 (1%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGT-GCATCACTTCCATACCAAGCCCGGCACGATTAAG 84043 ||||| || || || |||||||| | |||| |||||||||||||| ||||| |||| Sbjct 899 GGGAAATTGTGAGCATTACGTTCATTGCATAACTTCCATACCAAGGTTAGCACGGTTAAT 840 Query 84044 TACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTT 84103 | ||| ||||| || || | |||||| ||| ||||| || | || ||||| || Sbjct 839 GATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTACTGATTGGTTGAAATT 780 Query 84104 AAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAAC 84163 || ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || || Sbjct 779 GAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTAC 720 Query 84164 CACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTG 84223 || ||||||||||| | ||| || || | ||||||| |||||||| |||||| || Sbjct 719 TACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTG 660 Query 84224 GAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTG 84283 |||||| | || || || || |||||||| || || |||||||||||||| |||||||| Sbjct 659 GAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATAAGTTTCTTCTTCTTG 600 Query 84284 ACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGA 84343 |||||| ||||||| | ||| || |||||||||| ||||| | ||| | | ||| Sbjct 599 ACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGA 540 Query 84344 AGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCC 84403 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 539 GGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCC 480 Query 84404 CAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTT 84463 | ||||||||| || |||||||||||||| || || |||||||| |||| |||| |||| Sbjct 479 TAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTT 420 Query 84464 GAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATA 84523 ||| || || || || || || ||||| |||||||| || ||||| || | || || Sbjct 419 GAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTA 360 Query 84524 CACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGG 84583 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| || Sbjct 359 GATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGG 300 Query 84584 ACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAAT 84643 |||||||| ||||| | ||||||||| ||||||||||||||| | | |||||| Sbjct 299 TCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAG 240 Query 84644 CAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACC-ATTATATAGCCATTC-GTCCATA 84701 | |||||| | |||| |||| |||||| ||||| ||| |||| |||||| || | | Sbjct 239 TAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCTATTGTATAACCATTCATTCAACA 180 Query 84702 CTTGCTG-CTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTAC 84760 ||||| ||||||| || || || ||||| | ||| ||||| ||| | |||| | Sbjct 179 GATGCTGCCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAAT 120 Query 84761 GGCACCAGAAATGATGTTGTTTCCGTACA--TGAGAGAACCAG--CGACT-GGCTCACG- 84814 |||||| ||||| || ||| |||| || | | ||||| |||| ||| || ||||| Sbjct 119 GGCACCCGAAATAATATTG-TTCCATAAAAGTAAGAGATCCAGTAAAACTAGGTTCACGT 61 Query 84815 GATACC-GTCAATATCAACTGGGGGTG-CACCAACGAATGCAATGATGAAA 84863 ||||| |||||||| ||||| || | || ||| ||| || || || ||| Sbjct 60 AATACCTATCAATATCTACTGGAGGAGTCAGCAATGAAGGCGATAATAAAA 10 >seq2990 Length=15620 Score = 459 bits (508), Expect = 3e-124 Identities = 583/789 (74%), Gaps = 15/789 (2%) Strand=Plus/Minus Query 84180 AAGAAAAAGTGGAGAGAACGACTA-TTGTTG--AAGGAAG-CATACTGG--AAGAT--AA 84231 |||||| ||| | ||||||| | |||||| || ||| |||| | | |||| || Sbjct 15614 AAGAAATAGT--AAAGAACGAAGAGTTGTTGTAAACTAAGACATATTAGGTAAGAATCAA 15557 Query 84232 GACGACCGAAGTAG-CCGT-GAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAA 84289 ||| || || || |||| |||| || || |||||||||||||| |||||||||||||| Sbjct 15556 TACGGCCAAAATAAACCGTAGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAA 15497 Query 84290 CTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGAC 84349 ||||||| | ||| || |||||||||| ||||| | ||| | | ||| || || Sbjct 15496 TCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTAC 15437 Query 84350 AAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACAT 84409 | ||||||||||| ||| ||||| | || |||||||||||||| || || | ||| Sbjct 15436 CAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCAT 15377 Query 84410 GTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGT 84469 |||||| || |||||||||||||| || || |||||||| |||| |||| ||||||| || Sbjct 15376 GTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGT 15317 Query 84470 TCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAG 84529 || || || || || ||||| |||||||| || ||||| || | || || | | Sbjct 15316 ACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAA 15257 Query 84530 GAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCAT 84589 ||| ||||||| || |||||||| ||||| || || |||||| ||||| || ||||| Sbjct 15256 GAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCAT 15197 Query 84590 ACCGAGACGATATGAAAGTT-CCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGA 84648 ||| ||||| | ||||| |||| ||||||||||||||| | | |||||| | || Sbjct 15196 ACCCAGACGGAAACTAAGTTCCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGA 15137 Query 84649 AGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTG 84708 |||| | |||| |||| |||||| |||||||| |||| |||||| || | | ||||| Sbjct 15136 AGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCTG 15077 Query 84709 CTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAG 84768 ||||||| || || || ||||| | ||| ||||| ||| | |||| | |||||| | Sbjct 15076 CTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCG 15017 Query 84769 AAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATAT 84828 |||| || |||||||| || | ||||| |||| || || ||||| ||||| ||||||| Sbjct 15016 AAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATAT 14957 Query 84829 CAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTT 84887 | ||||| || ||| ||| ||| || || || || ||||| ||| || | | || || Sbjct 14956 CTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTA 14898 Query 84888 GGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAA 84947 || ||||| | | |||||||| |||| || | |||||| | ||| ||| | ||| Sbjct 14897 GGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAG 14838 Query 84948 TCACAGAAG 84956 | ||||||| Sbjct 14837 TTACAGAAG 14829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571130246031000