Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq945 196 5e-45 seq14165 116 4e-21 seq4091 116 4e-21 seq3314 116 4e-21 >seq945 Length=6199 Score = 196 bits (216), Expect = 5e-45 Identities = 579/884 (65%), Gaps = 29/884 (3%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || |||| ||||| ||||| |||||||| || |||| || || || | Sbjct 2509 TTTCTGATACTCCCCAACCCTTTTCTCAAAAAAATTAGTCTTCCCCTGCAACGAGATCAA 2450 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT--CCTAATTCTAAT 18786 ||||| ||||||| ||||| | |||||||| |||||| |||| || || | Sbjct 2449 CTCCATCCAATCAAACGGATTCTGCACATTATACATTTTT--GAATAACCCAACGCCCCC 2392 Query 18787 AGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATT 18846 | | |||||||| ||| | | |||||| |||||| ||| | |||||| || | Sbjct 2391 AACAACCTATCCGCGACATACTCAATATAAACACTCATCAAATCCCCATTCATCCCAACC 2332 Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906 || | || | || || || || || ||| || ||||| || |||| ||| Sbjct 2331 AAAGCACACGGCAACGCCTCGCAAACGAACTCCCTTTCGATGTTTACAGCGTCTGCGATA 2272 Query 18907 ATAGATACAACTCTATCTTCATTAGG----AGGGTATAGAAGATGTTTAAACATCAAACA 18962 || | || | || ||| | | | | || ||| ||| |||||| Sbjct 2271 ATCCCTTTTACGCGTTCCTCACTCAACTTCATTTTCAACAAACTGTATAA----CAAACA 2216 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 || ||||| ||||| | ||||||||||| |||||| || || ||||| |||||||| Sbjct 2215 CGCGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGTTAAACC 2156 Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATA 19081 ||||| | || | |||||| ||||| || || | ||||| | || ||||| |||| Sbjct 2155 CGGCATTAACCCACGTTTTTTCAACCAAAAAATCG-CGCAAAAACTCCCCGAAAAAAATA 2097 Query 19082 TACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA--CTAGCATCATTATTATG 19139 | ||||| || ||||| || | | | |||| | || | | ||| || Sbjct 2096 TCCCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAGTTTCGGATC-----CATC 2042 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 ||||||||||| ||||| | || || || | ||||| || || || || |||| Sbjct 2041 AATCCATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATAGCCCG 1982 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 ||||| | |||| | |||||||| ||| | || | ||| ||||| ||||| Sbjct 1981 AAATAACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACTATACAT 1922 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 ||| ||||||||||| || || || || || ||||||||||| | || || | | Sbjct 1921 TTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCACGCGCCTCGGCGAC 1862 Query 19320 CTGTACTTCACTACAAAATCTTTCGACC----AAATTTTCATTAACTATTCCATCACTAG 19375 || ||||| | || || | ||||| | ||||| ||| || || || | Sbjct 1861 TTGGACTTC-TTTCATAAAC---CGACCAGCGAGGTTTTCGAGAACGATGCCGTCTGACG 1806 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435 | || ||||| || | || || |||| || || ||| | |||||| | | || Sbjct 1805 CGGCGAAAAAAGCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAGGCGTCCC 1746 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | | | ||||| |||||||| |||||||| | |||||||| || || || |||| Sbjct 1745 AGTGACGTTGATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCGGCTT 1686 Query 19496 TTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATA 19539 |||||||||| | ||| || | | ||||| || || || ||| Sbjct 1685 TTTTATACATTTCCCAGATTTGTGGGTATTGAATTGGGAACATA 1642 >seq14165 Length=56756 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | ||| || | || ||||||||||| | |||||| ||| ||| | ||| | Sbjct 34799 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 34858 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||| | | ||||||||| ||||| | ||| || || | || || | ||||||| Sbjct 34859 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 34918 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 || | |||||||||||| |||| || ||| || ||||||||||| ||| | || | Sbjct 34919 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 34978 Query 48780 GTTTTAAAACCAAA 48793 ||||| |||||||| Sbjct 34979 GTTTTGAAACCAAA 34992 Score = 113 bits (124), Expect = 5e-20 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||||||||| | ||||| |||||||| ||| | || | | |||||| ||||| || Sbjct 34420 ACCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCC 34479 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| ||||| || || |||||| | || | |||||| ||| || Sbjct 34480 ATTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGA 34539 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACA-CCGTTTAAGGGTATCATAAA 48537 || ||| || || ||||| ||| || | |||||| | ||||| || ||||| | Sbjct 34540 AACACCAATTCCTCCTGCTGATTTGCTAATAACAGCACATTCCTTTAA-CGTGTCATATA 34598 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 | ||||| || ||||| ||| |||| || || ||||| ||| Sbjct 34599 TGCCTTCAATGCTATCTTCTTTCATGCATATCAGGAAACAGCTA 34642 >seq4091 Length=20028 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | ||| || | || ||||||||||| | |||||| ||| ||| | ||| | Sbjct 16516 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 16575 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||| | | ||||||||| ||||| | ||| || || | || || | ||||||| Sbjct 16576 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 16635 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 || | |||||||||||| |||| || ||| || ||||||||||| ||| | || | Sbjct 16636 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 16695 Query 48780 GTTTTAAAACCAAA 48793 ||||| |||||||| Sbjct 16696 GTTTTGAAACCAAA 16709 Score = 113 bits (124), Expect = 5e-20 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||||||||| | ||||| |||||||| ||| | || | | |||||| ||||| || Sbjct 16136 ACCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCC 16195 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| ||||| || || |||||| | || | |||||| ||| || Sbjct 16196 ATTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGA 16255 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACA-CCGTTTAAGGGTATCATAAA 48537 || ||| || || ||||| ||| || | |||||| | ||||| || ||||| | Sbjct 16256 AACACCAATTCCTCCTGCTGATTTGCTAATAACAGCACATTCCTTTAA-CGTGTCATATA 16314 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 | ||||| || ||||| ||| |||| || || ||||| ||| Sbjct 16315 TGCCTTCAATGCTATCTTCTTTCATGCATATCAGGAAACAGCTA 16358 >seq3314 Length=31422 Score = 116 bits (128), Expect = 4e-21 Identities = 284/422 (67%), Gaps = 10/422 (2%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC-TAATGATATACA 18728 || ||||| || | ||||| || || || |||||||| || ||||| ||| || || | Sbjct 22108 TTCTGATACTCCCCGACTCTCTTCTCGAAAAAATTAGTCTT-CCCTCGTAACGAAATCAA 22166 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| ||||||| ||||| | | ||| ||||| |||| |||||| | Sbjct 22167 TTCCATCCAATCAAACGGATTCTGAGTACCATACATTTTGCCACATCCCAATTCTCCCAA 22226 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | ||||||||||||||| | ||| ||| |||| | | ||| |||||||| | | Sbjct 22227 CAATCTATCCGCTACAAACTCAATGTATTGACTCATAAGACCACCGTTCATTCCAACAAG 22286 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||||| || || || ||| ||| || || | ||||| || || | || Sbjct 22287 CGCGCAAGGTAACGCGTCGCAAACAAACTCTCTCTCGATCTCAACTGCATCAGAAACGAT 22346 Query 18909 AGATACAACTCTATCTTCA-TTAGGAGG--GTATAGAAGATGTTTAAACATCAAACATGC 18965 | || | ||||| |||| | || ||| | ||| | | || ||| || Sbjct 22347 GCCTTTTACGCCTTCTTCCGTTAGTTTGTTGTTTAGTAA---TTTGTATAGCAGACACGC 22403 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||| || ||||||||||| | ||||| |||||||| || || ||||||| || || Sbjct 22404 AAAGTCGCAATGTAGTCCTTTGTCTCGTGAGATCAATTCGTTTGAGAATGTTAGGCCTGG 22463 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATG-ATCCAGAAAAGAATATAC 19084 ||||| ||| | ||||||||||| ||||| | ||||| | ||| ||||| ||||| | Sbjct 22464 CATCAATCCGCGCTTTTTTAACCAAAATATCG-CGCAAAAGCTTCCTGAAAAAAATATCC 22522 Query 19085 CT 19086 || Sbjct 22523 CT 22524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561967745823000