Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq20014 549 6e-152 seq2978 446 5e-121 seq2990 379 6e-101 seq18988 87.8 5e-13 >seq20014 Length=5322 Score = 549 bits (608), Expect = 6e-152 Identities = 714/987 (72%), Gaps = 0/987 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||| ||| || ||||| ||||| || ||||| ||||||||||||||||| || | Sbjct 934 AGCAGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAG 993 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||||| || ||||||||||| | || | || | |||||| || Sbjct 994 GTTAGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTAC 1053 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 ||| || ||||| || || || || || || |||||||||||| || || | ||| || Sbjct 1054 TGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 1113 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | || ||||||||||| ||||||||||||||| || || || Sbjct 1114 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTT 1173 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||| | || ||||| || || ||||| || || || ||||| Sbjct 1174 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATA 1233 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||||||||| |||||| | || || | ||| ||||||| | || ||||| Sbjct 1234 AGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTC 1293 Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388 | || | || || || | | || ||||||||| |||| | || ||||| Sbjct 1294 CCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAA 1353 Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448 ||| || || || || ||||| || || || ||||||||||| ||||| || ||||| || Sbjct 1354 TACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1413 Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 36508 |||| ||| || |||||||| || ||||| || ||||||||||||||||| || || || Sbjct 1414 TACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCC 1473 Query 36509 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 36568 ||| |||| ||||||| ||||| |||||| || ||||||||||| |||||||| || Sbjct 1474 TTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGC 1533 Query 36569 TACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628 ||| ||||| || | |||||| || | ||||||||||||| | || |||| ||| Sbjct 1534 AACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1593 Query 36629 AGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 36688 | | | ||||| | ||||| | ||||| |||| ||| || || || || ||||| Sbjct 1594 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAA 1653 Query 36689 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGA 36748 ||| || || | | ||| |||||||| |||||||| || || | ||| || || || Sbjct 1654 CCATTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGA 1713 Query 36749 TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 36808 | || | || || || || || || ||||||||||| |||| | ||| || ||||| Sbjct 1714 AGTAGGAATAATGGCACCCGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGG 1773 Query 36809 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 36868 |||||||||||||| ||||| || ||||| ||||||| || || || | |||| | | Sbjct 1774 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA 1833 Query 36869 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 36928 ||| || || | | ||||||||| | || |||||||| || | || || ||||| Sbjct 1834 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTT 1893 Query 36929 GTTTGTACTTGTAACCCAGTCACATAA 36955 | || || || | ||||| ||| || Sbjct 1894 TTCGGTGCTGGTTATCCAGTTACAGAA 1920 >seq2978 Length=1535 Score = 446 bits (494), Expect = 5e-121 Identities = 652/906 (72%), Gaps = 13/906 (1%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCAT-GCATAACTTCCATGCCTA 36027 ||| |||| ||| || ||||| ||||| || ||||| |||| ||||||||||||| || | Sbjct 915 AGCAGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATTGCATAACTTCCATACCAA 856 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 || |||||||||| || ||||||||||| | || | || | |||||| | Sbjct 855 GGTTAGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTA 796 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 |||| || ||||| || || || || || || |||||||||||| || || | ||| | Sbjct 795 CTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAG 736 Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTAT 36207 | | ||| || | || ||||||||||| ||||||||||||||| || || | Sbjct 735 TGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGT 676 Query 36208 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 36267 | || |||||||| |||||||| | || ||||| || || ||||| || || || |||| Sbjct 675 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTAT 616 Query 36268 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 36327 | || ||||||||||| |||||| | || || | ||| ||||||| | || |||| Sbjct 615 AAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTT 556 Query 36328 CACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 36387 | | || | || || || | | || ||||||||| |||| | || |||| Sbjct 555 CCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGA 496 Query 36388 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAA 36447 |||| || || || || ||||| || || || ||||||||||| ||||| || ||||| | Sbjct 495 ATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 436 Query 36448 AGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCC 36507 | |||| ||| || |||||||| || ||||| || ||||||||||||||||| || || | Sbjct 435 ATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTC 376 Query 36508 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 36567 |||| |||| ||||||| ||||| |||||| || ||||||||||| |||||||| | Sbjct 375 CTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATG 316 Query 36568 CTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGT 36627 | ||| ||||| || | |||||| || | ||||||||||||| | || |||| || Sbjct 315 CAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 256 Query 36628 AAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC-GTTATAT 36686 || | | ||||| | ||||| | ||||| |||| ||| || || || || ||| Sbjct 255 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCTATTGTAT 196 Query 36687 AACCACTC-GTCGAGGGTTGCAG-CTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGT 36744 ||||| || || | | ||| | ||||||| |||||||| || || | ||| || || Sbjct 195 AACCATTCATTCAACAGATGCTGCCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTG 136 Query 36745 TCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCAT-AGAGTAA-TGCTCC--T 36800 || | || | || || || || || || ||| |||||| | ||||| | ||| | Sbjct 135 CAGAAGTAGGAATAATGGCACCCGAAATAATATTG-TTCCATAAAAGTAAGAGATCCAGT 77 Query 36801 GAGAC-AGGCTCACG-AATACC-ATCTATATCCACGGGAGGCG-CAGCAACAAATGCAAT 36856 | || ||| ||||| |||||| ||| ||||| || ||||| | |||||| || || || Sbjct 76 AAAACTAGGTTCACGTAATACCTATCAATATCTACTGGAGGAGTCAGCAATGAAGGCGAT 17 Query 36857 TAAAAA 36862 | ||| Sbjct 16 AATAAA 11 >seq2990 Length=15620 Score = 379 bits (420), Expect = 6e-101 Identities = 509/707 (72%), Gaps = 1/707 (0%) Strand=Plus/Minus Query 36250 GAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAG 36309 |||| || || || ||||| || ||||||||||| |||||| | || || | ||| || Sbjct 15536 GAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAG 15477 Query 36310 ATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAG 36369 ||||| | || ||||| | || | || || || | | || ||||||||| Sbjct 15476 ATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCAC 15417 Query 36370 CGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGA 36429 |||| | || |||||||| || || || || ||||| || || || |||||||||| Sbjct 15416 TAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGA 15357 Query 36430 TATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCA 36489 | ||||| || ||||| || |||| ||| || |||||||| || ||||| || ||||||| Sbjct 15356 TGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCA 15297 Query 36490 TACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTG 36549 |||||||||| || || ||||| |||| ||||||| ||||| |||||| || |||| Sbjct 15296 TACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTG 15237 Query 36550 CAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTT 36609 ||||||| |||||||| || ||| ||||| || | |||||| || | ||||||||| Sbjct 15236 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTT 15177 Query 36610 -CCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGA 36668 |||| | || |||| |||| | | ||||| | ||||| | ||||| |||| | Sbjct 15176 CCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCA 15117 Query 36669 TATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAG 36728 || || || || || |||||||| || || | | ||| |||||||| |||||||| || Sbjct 15116 TAAGGACCACCATTGTATAACCATTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAA 15057 Query 36729 TGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAG 36788 || | ||| || || || | || | || || || || || || ||||||||||| Sbjct 15056 TGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCATAA 14997 Query 36789 AGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACA 36848 |||| | ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| Sbjct 14996 AGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATG 14937 Query 36849 AATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAAC 36908 || || || | |||| | | ||| || || | | ||||||||| | || |||||| Sbjct 14936 AAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACGCCAAAC 14877 Query 36909 CACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 || || | || || ||||| | || || || | ||||| ||| || Sbjct 14876 CATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 14830 >seq18988 Length=14164 Score = 87.8 bits (96), Expect = 5e-13 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||| ||| || ||||| ||||| || ||||| ||||||||||||||||| || | Sbjct 7995 AGCAGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAG 7936 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAA 36056 || |||||||||| || ||||||||| Sbjct 7935 GTTAGCACGGTTAATGATATCAGCCCAA 7908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150418533081550