Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq20014 572 5e-159 seq2978 443 6e-120 seq2990 378 2e-100 seq18988 96.9 1e-15 >seq20014 Length=5322 Score = 572 bits (634), Expect = 5e-159 Identities = 725/991 (73%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| |||| || || ||||| ||||||||||| ||||| ||||| |||||||||||||| Sbjct 934 AGCAGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAG 993 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGC-TAGAGT--CAAC 5307 ||| |||||||| | || ||| ||||||||| || || || || | || | |||| Sbjct 994 GTTAGCACGGTTAATGATATCAGCCCAAGTGTTAA---TTACACGGCCTTGACTATCAAC 1050 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 ||||| || ||||| || || || || || || |||||||||||| ||| || | || Sbjct 1051 TACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 1110 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | || || ||||||| ||| ||||||||||||||| ||| || Sbjct 1111 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTT 1170 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 ||| || |||||||| |||||||| | || ||||| || || ||||| || || || || Sbjct 1171 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATT 1230 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547 ||| |||||||| ||||| |||||| | || || | ||| ||| | | || || Sbjct 1231 ATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGT 1290 Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607 ||| | || | ||| || || | | |||||||||||| || | | || || Sbjct 1291 TTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCC 1350 Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 |||||| ||||| || || |||||||| || || ||||||||||| ||||| || ||||| Sbjct 1351 GAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1410 Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727 |||||| | ||| ||||| ||||||||||| || || ||||||||||||||| || || Sbjct 1411 GAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCT 1470 Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAAT 5786 ||| || || | ||||| | || || || | ||| || || ||||| || ||||||| Sbjct 1471 TCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGT-CGCAGCTGCAACAGGAGCTGAAT 1529 Query 5787 ATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCA 5846 |||| || |||||| |||||||| || | | | ||||||||||||| | || |||| Sbjct 1530 ATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCA 1589 Query 5847 AGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGT 5906 |||| || | ||||| | |||||| | || | |||| || || || ||||||| Sbjct 1590 TGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGT 1649 Query 5907 AAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGT 5966 | | ||||||||| | | ||||||||||| || || || || || || || || || Sbjct 1650 ATAACCATTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTG 1709 Query 5967 TGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGA 6026 || | || | || ||| || || || || ||||||||||| ||||||||||| | | Sbjct 1710 CAGAAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAA 1769 Query 6027 CGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATG 6086 | |||||||| || || || || || ||||| || ||||| | ||| || | |||||| Sbjct 1770 CAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATA 1829 Query 6087 CAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGC 6146 ||| ||||||||| || | | || ||||| || || |||||||| || | || || | Sbjct 1830 CAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACGCCAAACCATCCAATGTAAAGAC 1889 Query 6147 GGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||| | |||||| || | ||||| |||||| Sbjct 1890 GGTTTTCGGTGCTGGTTATCCAGTTACAGAA 1920 >seq2978 Length=1535 Score = 443 bits (490), Expect = 6e-120 Identities = 664/921 (72%), Gaps = 24/921 (3%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGT-GCATTACTTCCATACCAA 5249 ||| |||| || || ||||| ||||||||||| ||||| | |||| ||||||||||||| Sbjct 915 AGCAGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATTGCATAACTTCCATACCAA 856 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGC-TAGAGT--CAA 5306 |||| |||||||| | || ||| ||||||||| || || || || | || | ||| Sbjct 855 GGTTAGCACGGTTAATGATATCAGCCCAAGTGTTAA---TTACACGGCCTTGACTATCAA 799 Query 5307 CGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAG 5366 | ||||| || ||||| || || || || || || |||||||||||| ||| || | || Sbjct 798 CTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAG 739 Query 5367 AGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTAT 5426 || | ||| || | || || ||||||| ||| ||||||||||||||| ||| | Sbjct 738 CAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGT 679 Query 5427 TGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGT 5486 |||| || |||||||| |||||||| | || ||||| || || ||||| || || || | Sbjct 678 TGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATAT 619 Query 5487 TATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTG 5546 |||| |||||||| ||||| |||||| | || || | ||| ||| | | || | Sbjct 618 TATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGG 559 Query 5547 TTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCAC 5606 |||| | || | ||| || || | | |||||||||||| || | | || | Sbjct 558 TTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGC 499 Query 5607 CGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCT 5666 ||||||| ||||| || || |||||||| || || ||||||||||| ||||| || |||| Sbjct 498 CGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 439 Query 5667 GGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAAC 5726 ||||||| | ||| ||||| ||||||||||| || || ||||||||||||||| || | Sbjct 438 GGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGC 379 Query 5727 TTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAA 5785 |||| || || | ||||| | || || || | ||| | | || ||||| || |||||| Sbjct 378 TTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCG-CAGCTGCAACAGGAGCTGAA 320 Query 5786 TATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCC 5845 ||||| || |||||| |||||||| || | | | ||||||||||||| | || ||| Sbjct 319 TATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 260 Query 5846 AAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCC-ATT 5904 | |||| || | ||||| | |||||| | || | |||| || || || || ||| Sbjct 259 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCTATT 200 Query 5905 GTAAAGCCATTCA-TCGAGATTGGCTG-CTTCCCAGATGGGATAGAAGTGTAACCCAATT 5962 ||| | ||||||| || | | |||| ||||||| || || || || || || || || Sbjct 199 GTATAACCATTCATTCAACAGATGCTGCCTTCCCATATTGGGTAAAAATGCAAACCTATA 140 Query 5963 GCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCAT-AGAGT-AGAGATC 6020 || || | || | || ||| || || || || ||| |||||| | ||| ||||||| Sbjct 139 GCTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTG-TTCCATAAAAGTAAGAGATC 81 Query 6021 CTGCGA---CGGGTTCACGT-ATGCC-GTCGATGTCGACTGGGGGTG-CAGCTACGAATG 6074 | | | ||||||||| || || || || || ||||| || | |||| | ||| | Sbjct 80 CAGTAAAACTAGGTTCACGTAATACCTATCAATATCTACTGGAGGAGTCAGCAATGAAGG 21 Query 6075 C--TAATATAAATGCAGTAGT 6093 | ||||| |||| ||| ||| Sbjct 20 CGATAATA-AAATACAGAAGT 1 >seq2990 Length=15620 Score = 378 bits (418), Expect = 2e-100 Identities = 511/708 (72%), Gaps = 3/708 (0%) Strand=Plus/Minus Query 5472 GAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAG 5531 |||| || || || ||||| |||||||| ||||| |||||| | || || | ||| || Sbjct 15536 GAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAG 15477 Query 5532 AAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAG 5591 | | | || ||||| | || | ||| || || | | |||||||||||| Sbjct 15476 ATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCAC 15417 Query 5592 CGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGA 5651 || | | || |||||||| ||||| || || |||||||| || || |||||||||| Sbjct 15416 TAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGA 15357 Query 5652 TATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCA 5711 | ||||| || ||||||||||| | ||| ||||| ||||||||||| || || ||||||| Sbjct 15356 TGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCA 15297 Query 5712 TACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCG 5770 |||||||| || ||||| || || | ||||| | || || || | ||| | | || Sbjct 15296 TACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCG-CAGCT 15238 Query 5771 GCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGT 5830 ||||| || ||||||||||| || |||||| |||||||| || | | | |||||||| Sbjct 15237 GCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGT 15178 Query 5831 T-CCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTG 5889 | |||| | || |||| |||| || | ||||| | |||||| | || | |||| Sbjct 15177 TCCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTC 15118 Query 5890 GTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAA 5949 || || || |||||||| | ||||||||| | | ||||||||||| || || || || Sbjct 15117 ATAAGGACCACCATTGTATAACCATTCATCAACAGATGCTGCTTCCCATATTGGGTAAAA 15058 Query 5950 GTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATA 6009 || || || || || || | || | || ||| || || || || ||||||||||| Sbjct 15057 ATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCATA 14998 Query 6010 GAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTAC 6069 ||||||||||| | || |||||||| || || || || || ||||| || ||||| | Sbjct 14997 AAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAAT 14938 Query 6070 GAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAA 6129 ||| || | |||||| ||| ||||||||| || | | || ||||| || || ||||| Sbjct 14937 GAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACGCCAAA 14878 Query 6130 CCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||| || | || || ||||| | |||||| || | ||||| |||||| Sbjct 14877 CCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 14830 >seq18988 Length=14164 Score = 96.9 bits (106), Expect = 1e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| |||| || || ||||| ||||||||||| ||||| ||||| |||||||||||||| Sbjct 7995 AGCAGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAG 7936 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAA 5278 ||| |||||||| | || ||| |||||| Sbjct 7935 GTTAGCACGGTTAATGATATCAGCCCAA 7908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152613209766450