Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq20014 551 2e-152 seq2978 448 1e-121 seq2990 370 3e-98 seq18988 95.1 4e-15 >seq20014 Length=5322 Score = 551 bits (610), Expect = 2e-152 Identities = 712/983 (72%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||||||| |||||||| ||||| || ||||| ||||||||||||||||| || | || Sbjct 938 GCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 997 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || ||||||||||| | || | || | |||||| ||||| Sbjct 998 GCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTACTGAT 1057 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| || || | ||| || | | Sbjct 1058 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 1117 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| ||||||||||||||| ||| || || || Sbjct 1118 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 1177 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || || ||||| || || || ||||| || Sbjct 1178 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATAAGTT 1237 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||||||||| |||||| | || || | ||| ||||||| | || ||||| | Sbjct 1238 TCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTG 1297 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | || || || | | || ||||||||| |||| | || |||||||| Sbjct 1298 ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 1357 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || || || ||||| || || || ||||||||||| ||||| || ||||| || ||| Sbjct 1358 CCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 1417 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||| || |||||||| || ||||| || ||||||||||||||||| || || ||||| Sbjct 1418 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGA 1477 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 |||| ||||||| ||||| |||||| || ||||||||||| |||||||| || ||| Sbjct 1478 CCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACA 1537 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| || || | ||||||||||||| | || |||| |||| Sbjct 1538 GCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1597 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | || | | ||||| | ||||| |||| ||| || ||||| || || ||||| Sbjct 1598 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCAT 1657 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | | ||| |||||||| |||||||| || || | ||| || || ||| | Sbjct 1658 TCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTA 1717 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | || || || || || || ||||||||||| |||| | ||| || ||||| ||| Sbjct 1718 GGAATAATGGCACCCGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 1777 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| ||||| || ||||| ||||||| || || || | |||| | | | Sbjct 1778 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTT 1837 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 26412 || || || | | ||||||||| | || |||||||| || | || || ||||| | Sbjct 1838 GCGGTCAATAAGGTAGGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTTTTCG 1897 Query 26413 GTACTTGTAACCCAGTCACATAA 26435 || || || | ||||| ||| || Sbjct 1898 GTGCTGGTTATCCAGTTACAGAA 1920 >seq2978 Length=1535 Score = 448 bits (496), Expect = 1e-121 Identities = 650/902 (72%), Gaps = 13/902 (1%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCAT-GCATAACTTCCATGCCTAAGTC 25511 |||||||| |||||||| ||||| || ||||| |||| ||||||||||||| || | || Sbjct 911 GCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATTGCATAACTTCCATACCAAGGTT 852 Query 25512 GGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGA 25571 |||||||||| || ||||||||||| | || | || | |||||| ||||| Sbjct 851 AGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTACTGA 792 Query 25572 CTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAG 25631 || ||||| || || || || || || |||||||||||| || || | ||| || | Sbjct 791 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAA 732 Query 25632 CCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAA 25691 ||| || | || ||||||||||| ||||||||||||||| ||| || || || Sbjct 731 CCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAA 672 Query 25692 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGT 25751 |||||||| |||||||| | || ||||| || || ||||| || || || ||||| || Sbjct 671 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATAAGT 612 Query 25752 CTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACG 25811 ||||||||||| |||||| | || || | ||| ||||||| | || ||||| | Sbjct 611 TTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCT 552 Query 25812 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 25871 || | || || || | | || ||||||||| |||| | || |||||||| Sbjct 551 GATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 492 Query 25872 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGAC 25931 || || || || ||||| || || || ||||||||||| ||||| || ||||| || || Sbjct 491 ACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 432 Query 25932 AAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 25991 || ||| || |||||||| || ||||| || ||||||||||||||||| || || ||||| Sbjct 431 AATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTG 372 Query 25992 TCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTAC 26051 |||| ||||||| ||||| |||||| || ||||||||||| |||||||| || || Sbjct 371 ACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAAC 312 Query 26052 ACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGC 26111 | ||||| || | ||| || || | ||||||||||||| | || |||| |||| Sbjct 311 AGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACA 252 Query 26112 TGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACC-GTTATACAACC 26170 | | || | | ||||| | ||||| |||| ||| || ||||| || || |||| Sbjct 251 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCTATTGTATAACC 192 Query 26171 ACTC-GTCGAGGGTTGCAG-CTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 26228 | || || | | ||| | ||||||| |||||||| || || | ||| || || ||| Sbjct 191 ATTCATTCAACAGATGCTGCCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGA 132 Query 26229 TGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCAT-AGAGTAA-TGCTCC--TGAGA 26284 | || | || || || || || || ||| |||||| | ||||| | ||| | | | Sbjct 131 AGTAGGAATAATGGCACCCGAAATAATATTG-TTCCATAAAAGTAAGAGATCCAGTAAAA 73 Query 26285 C-AGGCTCACG-AATACC-ATCTATATCCACGGGAGGCG-CAGCAACAAATGCAATTAAA 26340 | ||| ||||| |||||| ||| ||||| || ||||| | |||||| || || || | | Sbjct 72 CTAGGTTCACGTAATACCTATCAATATCTACTGGAGGAGTCAGCAATGAAGGCGATAATA 13 Query 26341 AA 26342 || Sbjct 12 AA 11 >seq2990 Length=15620 Score = 370 bits (410), Expect = 3e-98 Identities = 507/707 (72%), Gaps = 1/707 (0%) Strand=Plus/Minus Query 25730 GAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAG 25789 |||| || || || ||||| || ||||||||||| |||||| | || || | ||| || Sbjct 15536 GAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAG 15477 Query 25790 ATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAG 25849 ||||| | || ||||| | || | || || || | | || ||||||||| Sbjct 15476 ATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCAC 15417 Query 25850 CGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGA 25909 |||| | || |||||||| || || || || ||||| || || || |||||||||| Sbjct 15416 TAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGA 15357 Query 25910 TATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCA 25969 | ||||| || ||||| || |||| ||| || |||||||| || ||||| || ||||||| Sbjct 15356 TGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCA 15297 Query 25970 TACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTG 26029 |||||||||| || || ||||| |||| ||||||| ||||| |||||| || |||| Sbjct 15296 TACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTG 15237 Query 26030 CAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTT 26089 ||||||| |||||||| || ||| ||||| || | ||| || || | ||||||||| Sbjct 15236 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTT 15177 Query 26090 -CCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGA 26148 |||| | || |||| |||| | | || | | ||||| | ||||| |||| | Sbjct 15176 CCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCA 15117 Query 26149 TATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAG 26208 || || ||||| || || ||||| || || | | ||| |||||||| |||||||| || Sbjct 15116 TAAGGACCACCATTGTATAACCATTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAA 15057 Query 26209 TGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAG 26268 || | ||| || || ||| | || | || || || || || || ||||||||||| Sbjct 15056 TGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCATAA 14997 Query 26269 AGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACA 26328 |||| | ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| Sbjct 14996 AGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATG 14937 Query 26329 AATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAAC 26388 || || || | |||| | | ||| || || | | ||||||||| | || |||||| Sbjct 14936 AAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACGCCAAAC 14877 Query 26389 CACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || || | || || ||||| | || || || | ||||| ||| || Sbjct 14876 CATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 14830 >seq18988 Length=14164 Score = 95.1 bits (104), Expect = 4e-15 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 25435 TCTGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATA 25494 |||| || ||| || |||||||| |||||||| ||||| || ||||| ||||||||| Sbjct 8009 TCTGGAGCTTCAATAGCAGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATA 7950 Query 25495 ACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAA 25536 |||||||| || | || |||||||||| || ||||||||| Sbjct 7949 ACTTCCATACCAAGGTTAGCACGGTTAATGATATCAGCCCAA 7908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151957366150700