Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq945 163 3e-35 >seq945 Length=6199 Score = 163 bits (180), Expect = 3e-35 Identities = 356/529 (67%), Gaps = 7/529 (1%) Strand=Plus/Minus Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 || ||||| || ||||| ||||| ||||| || ||||| |||||| || || ||||| Sbjct 2223 AACAAACACGCGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAAC 2164 Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA-GA 37288 ||||| || |||||||| || | |||||| | |||||| || || |||||| ||| || Sbjct 2163 GTTAAACCCGGCATTAACCCACGTTTTTTCAACCAAAAAATCGC-GCAAAAACTCCCCGA 2105 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATA 37348 ||| || || ||||| || ||||| || | || ||| |||||||| | Sbjct 2104 AAAAAATATCCCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAGTT----TCGG 2049 Query 37349 ATC-AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAA 37407 ||| | ||||||||| | ||| | || ||| | |||||| ||| ||||||| Sbjct 2048 ATCCATCAATCCATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAA 1989 Query 37408 TTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAAC 37467 | || || | ||||||||| | | |||| | ||||||| || | | |||| Sbjct 1988 TAGCCCGAAATAACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAAC 1929 Query 37468 TATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTT 37527 ||||||||||||| |||||||| ||||| || || || || || ||||| | || | Sbjct 1928 TATACATTTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCACGCGCCT 1869 Query 37528 CAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCAC 37587 | | | ||| || || || | ||||| ||| | |||||| ||| || || || Sbjct 1868 CGGCGACTTGGACTTCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTG 1809 Query 37588 TAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTT 37647 || || || ||||| || || | | || || || | ||| | | | ||| | Sbjct 1808 ACGCGGCGAAAAAAGCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAGGCGT 1749 Query 37648 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||| | | ||||| |||||||| ||||| || |||||||||| Sbjct 1748 CCCAGTGACGTTGATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAA 1700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592168165503000