Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq16550 120 2e-22 seq8889 107 1e-18 seq4586 105 5e-18 seq5280 95.1 9e-15 seq10926 93.3 3e-14 >seq16550 Length=20979 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| |||||||| |||||||||| || | || | || || Sbjct 17922 ACCAAATGCAGAGTCGACTCCTTTTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCA 17981 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCT 48676 | |||||| || ||||| ||||| | |||||| || | ||||| | || ||||| || Sbjct 17982 AGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATC-CCTTCCTTATCTTG 18040 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||||| || ||| | | | || || || || ||||||| || || ||||| Sbjct 18041 AATCTTTGCCTTGACATTATCAATAGTATCCGAGCTTTCAACCTCCAAAGTGATGGTTTT 18100 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||||||||||||||||||||| Sbjct 18101 CCCTGTCAAAGTTTTTACAAAAATCTGCAT 18130 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| |||||||| | || | || | || ||||| || Sbjct 17244 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGTGTGCGTCCATCTTCCAATTGT 17303 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || || || || |||| | ||| || || | ||||| | |||||||| || ||||| Sbjct 17304 TTCCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGGATC-CCCTCCTTATCCTGTATCTT 17362 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | | ||||| | ||||||||||| ||||| |||||||| || Sbjct 17363 GGCCTTGACATTATCAATCGTATCTGAAGACTCCACCTCCAAAGTAATGGTTTTTCCAGT 17422 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 ||| || || ||||| ||||||||| Sbjct 17423 CAACGTCTTGACAAAGATCTGCATC 17447 >seq8889 Length=9065 Score = 107 bits (118), Expect = 1e-18 Identities = 142/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||||| || | || | || ||||| || ||||||||||| Sbjct 2262 CTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGTCCATCTTCCAATTGTTTACCGGCAAA 2203 Query 48635 TATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 || || | ||| || || | ||||| | |||||||| || |||||| || ||| Sbjct 2202 GATGAGCCTCTGCTGGTCTGGTGGGATC-CCCTCCTTATCCTGAATCTTGGCCTTGACAT 2144 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | || || || | ||||||||||| || || |||||||| ||||||||||| | Sbjct 2143 TGTCAATAGTATCAGAAGACTCCACCTCCAAAGTGATGGTTTTTCCTGTCAAAGTTTTAA 2084 Query 48754 CAAAAATCTGCAT 48766 | ||||||||||| Sbjct 2083 C-AAAATCTGCAT 2072 >seq4586 Length=18721 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | |||||| || || || || || ||||| ||||| |||| Sbjct 13881 CCACCCCTCAAACGAAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGCA 13940 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| || | ||| || |||||||| ||||| | ||| ||||| | |||| Sbjct 13941 AGGGTACGACCGTCCTCAAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 14000 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| |||||| || ||| | | | || || ||||||| Sbjct 14001 ATCCCTTCTTTGTCTTGAATCTTGGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCACC 14060 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || ||||| ||||||||||| ||||| ||||||||| Sbjct 14061 TCGAGAGTGATGGTCTTTCCAGTCAAAGTTTTCACAAATATCTGCATC 14108 >seq5280 Length=29361 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| ||| || |||||||||||||| | || | || Sbjct 6989 AGACGGAGCACAAGATGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCAAGTGTACGT 6930 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 | || ||||| || || || || || |||| | ||| ||||| | ||||| | ||||| Sbjct 6929 CCATCTTCCAATTGTTTCCCAGCGAAGATCAACCTCTGCTGATCTGGTGGGATC-CCCTC 6871 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || |||||| || ||| | | | || || | ||||||||||| || Sbjct 6870 CTTATCCTGAATCTTGGCCTTGACATTGTCAATCGTATCAGAAGACTCCACCTCCAAAGT 6811 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| || || |||||||||||||| Sbjct 6810 GATGGTTTTCCCTGTCAAGGTCTTCACAAAAATCTGCAT 6772 >seq10926 Length=11099 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| |||||||| | || | || | || ||||| || Sbjct 7824 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGTGTGCGTCCATCTTCCAATTGT 7883 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || || || || |||| | ||| || || | ||||| | |||||||| || ||||| Sbjct 7884 TTCCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGGATC-CCCTCCTTATCCTGTATCTT 7942 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | | ||||| | ||||||||||| ||||| |||||||| || Sbjct 7943 GGCCTTGACATTATCAATCGTATCTGAAGACTCCACCTCCAAAGTAATGGTTTTTCCAGT 8002 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 ||| || || ||||| ||||||||| Sbjct 8003 CAACGTCTTGACAAAGATCTGCATC 8027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380844398259225