Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq20014 610 7e-170 seq2978 529 2e-145 seq2990 394 1e-104 seq18988 91.5 2e-13 >seq20014 Length=5322 Score = 610 bits (676), Expect = 7e-170 Identities = 705/948 (74%), Gaps = 6/948 (1%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| || || |||||||||||| ||| | | ||| | || || || || Sbjct 1878 GGATGGTTTGGCGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATC 1819 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 1818 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1759 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| ||||| || || || ||||| | |||||| ||| ||||| ||| Sbjct 1758 CTACTTTATGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGT 1699 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || || |||||||||||| || ||||||| ||||| || |||||||| Sbjct 1698 TTGCATTTTTACCCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGT 1639 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 1638 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 1579 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| || ||| | |||||||| |||||||| ||||||||| || || || Sbjct 1578 TGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCT 1519 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | || || ||||| |||||| |||| || | |||||||| || ||||| Sbjct 1518 GTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGAT 1459 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||||| || |||||||||||||| |||| |||| | || ||||| || |||||| Sbjct 1458 GGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 1399 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 |||||||| |||||||| || || ||| | || || || ||||||||||| || || || Sbjct 1398 AACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTA 1339 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 |||||||||||||| |||||| | || || ||| | | ||||| ||||| || || | Sbjct 1338 TTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAAT 1279 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 || || ||| | ||||| | ||||| ||||||||||| ||||| || || || || Sbjct 1278 GAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCC 1219 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCA 163260 ||||| || || ||||| || ||||||||||| ||||| |||||||||||| ||||| Sbjct 1218 GCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCT 1159 Query 163261 CTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTG 163320 | || |||||||| ||||| | ||||| || | |||||||||||||| | ||| | Sbjct 1158 TTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATC 1099 Query 163321 TCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCA 163377 |||||||| |||||||| || |||||||| ||||||||||| || ||||| | Sbjct 1098 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA 1039 Query 163378 GGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAA 163437 || || || ||| |||||||| |||||| ||||| | || |||||||||||| Sbjct 1038 GGCCGT---GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAA 982 Query 163438 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||| || |||||||||||||| ||||| || ||| | |||||| Sbjct 981 GTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGACTTAGCTGCT 934 >seq2978 Length=1535 Score = 529 bits (586), Expect = 2e-145 Identities = 671/909 (74%), Gaps = 19/909 (2%) Strand=Plus/Plus Query 162592 TTCATCATTGCATTCATTGCAG-CACCTCCAGTTGATATCGAT-GGTATCA-GAGAACCT 162648 || || || || |||||||| | | |||||||| ||||| ||| ||||| | | |||||| Sbjct 11 TTTATTATCGCCTTCATTGCTGACTCCTCCAGTAGATATTGATAGGTATTACGTGAACCT 70 Query 162649 G---TTGCAGGTTCACTTC--TCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTA 162703 || | || || ||| | ||||| ||||| || || || ||||| | |||||| Sbjct 71 AGTTTTACTGGATCTCTTACTTTTATGG-AACAATATTATTTCGGGTGCCATTATTCCTA 129 Query 162704 GTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAG-CAGCAACTCTTGA-TGA 162761 ||| ||||| ||| | || || || || || ||||||| ||||| || |||| ||| Sbjct 130 CTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGGCAGCATCTGTTGAATGA 189 Query 162762 GTGGTTGTATAAT-GGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 162820 ||||| || ||| ||||| |||| |||| | || | |||||| | | || | Sbjct 190 ATGGTTATACAATAGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAG 249 Query 162821 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCT 162880 | ||| |||||| ||||||||||| || ||| | |||||||| |||||||| Sbjct 250 CTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTG 309 Query 162881 GTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCG 162940 ||||||||| || || || || | || || ||||| |||||| |||| || | | Sbjct 310 CTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTG 369 Query 162941 GTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGT 163000 ||||||| || ||||| | |||||||| || |||||||||||||| |||| |||| Sbjct 370 GTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGA 429 Query 163001 TCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAG 163060 | || ||||| || |||||||||||||| |||||||| || || ||| | || || || | Sbjct 430 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTG 489 Query 163061 GTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTA 163120 |||||||||| || || || |||||||||||||| |||||| | || || ||| | | | Sbjct 490 GTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGA 549 Query 163121 TCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAG 163180 |||| ||||| || || | || || ||| | ||||| | ||||| |||||||||| Sbjct 550 TCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAG 609 Query 163181 AGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCAT 163240 | ||||| || || || || ||||| || || ||||| || ||||||||||| ||||| Sbjct 610 AAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 669 Query 163241 CTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCT 163300 |||||||||||| ||||| | || |||||||| ||||| | ||||| || | |||| Sbjct 670 GTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCT 729 Query 163301 GGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACC 163360 |||||||||| | ||| | |||||||| |||||||| || |||||||| ||||||| Sbjct 730 GGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 789 Query 163361 AATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACA 163417 |||| || ||||| ||| || || ||| |||||||| |||||| ||||| Sbjct 790 AATCAGTAGTTGATAGTCAAGGCCGT---GTAATTAACACTTGGGCTGATATCATTAACC 846 Query 163418 GAGCAGGACTTGGTATGGAAGTTATGC-ACGAGCGTAATGCTCACAACTTCCCACTTGAC 163476 | || ||||||||||||||||||| | || |||||||||||||| ||||| || ||| Sbjct 847 GTGCTAACCTTGGTATGGAAGTTATGCAATGAACGTAATGCTCACAATTTCCCTCTAGAC 906 Query 163477 CTTGCTGCT 163485 | |||||| Sbjct 907 TTAGCTGCT 915 >seq2990 Length=15620 Score = 394 bits (436), Expect = 1e-104 Identities = 487/665 (73%), Gaps = 1/665 (0%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| || || |||||||||||| ||| | | ||| | || || || || Sbjct 14872 GGATGGTTTGGCGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATC 14931 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 14932 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 14991 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| ||||| || || || ||||| | |||||| ||| ||||| ||| Sbjct 14992 CTACTTTATGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGT 15051 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || || |||||||||||| || ||||||| ||||| || |||||||| Sbjct 15052 TTGCATTTTTACCCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGT 15111 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 15112 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 15171 Query 162841 TGGG-AACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 162899 |||| ||||| || ||| | |||||||| |||||||| ||||||||| || || || Sbjct 15172 TGGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCC 15231 Query 162900 AGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGA 162959 || | || || ||||| |||||| |||| || | |||||||| || ||||| Sbjct 15232 TGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGA 15291 Query 162960 CGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCA 163019 | |||||||| || |||||||||||||| |||| |||| | || ||||| || ||||| Sbjct 15292 TGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 15351 Query 163020 CAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACT 163079 ||||||||| |||||||| || || ||| | || || || ||||||||||| || || || Sbjct 15352 CAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCT 15411 Query 163080 CTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCA 163139 |||||||||||||| |||||| | || || ||| | | ||||| ||||| || || | Sbjct 15412 ATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAA 15471 Query 163140 AGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGC 163199 || || ||| | ||||| | ||||| ||||||||||| ||||| || || || || Sbjct 15472 TGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGC 15531 Query 163200 TGCTC 163204 |||| Sbjct 15532 CGCTC 15536 >seq18988 Length=14164 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 163398 TTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGC 163457 |||||| |||||| ||||| | || |||||||||||||||||||| || |||||||| Sbjct 7908 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 7967 Query 163458 TCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||| ||||| || ||| | |||||| Sbjct 7968 TCACAATTTCCCTCTAGACTTAGCTGCT 7995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552946010283000