Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq13411 95.1 1e-14 seq5340 95.1 1e-14 seq10926 86.0 5e-12 seq16550 82.4 6e-11 seq8889 82.4 6e-11 >seq13411 Length=19963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || || |||||||| ||||| || ||||| || ||| ||| ||| | Sbjct 11259 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 11318 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | || | || || || | || |||||||| || | || ||| Sbjct 11319 TCCGACACAATCGACAATGTGAAAGCCAAGATTCAA-GACAAAGAAGGCATCCCACCAGA 11377 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||| | | |||||||| ||||||||| | ||||| | || | ||||| || Sbjct 11378 CCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTA 11437 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || ||||||||||| ||||| || |||| ||| | ||||| || || Sbjct 11438 CAATATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGG 11488 >seq5340 Length=22833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || || |||||||| ||||| || ||||| || ||| ||| ||| | Sbjct 14492 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 14433 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | || | || || || | || |||||||| || | || ||| Sbjct 14432 TCCGACACAATCGACAATGTGAAAGCCAAGATTCAA-GACAAAGAAGGCATCCCACCAGA 14374 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||| | | |||||||| ||||||||| | ||||| | || | ||||| || Sbjct 14373 CCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTA 14314 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || ||||||||||| ||||| || |||| ||| | ||||| || || Sbjct 14313 CAATATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGG 14263 >seq10926 Length=11099 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| || || || ||||||||||| || ||| || Sbjct 8482 ATGCAGATTTTTGTGAAAACTTTGACAGGGAAAACCATTACTTTGGAGGTTGAAAGCTCG 8423 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| || ||| || ||||| ||| | || || || Sbjct 8422 GATACCATTGACAACGTCAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCGGACCAG 8363 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || ||||| | |||||| | ||| | || ||||| ||| Sbjct 8362 CAGAGGCTTATCTTTGCAGGAAAACAGCTTGAAGATGGTCGTACTCTAGCTGATTACAAC 8303 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||| ||||| || ||| |||| | || || | || ||||| Sbjct 8302 ATCCAGAAAGAGTCTACCCTTCACTTGGTGCTGAGGTTGAGGGGTGGGAT 8253 >seq16550 Length=20979 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| || || || || || || || ||| || ||| Sbjct 17902 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACAATCACTTTGGAAGTCGAGAGCTCA 17843 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| || || ||||| | || |||||| Sbjct 17842 GATACCATCGATAATGTCAAGGCCAAAATCCAAGATAAGGAGGGGATCCCACCAGATCAG 17783 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || ||||| | |||||| | || |||| ||||||||| Sbjct 17782 CAGAGGCTTATCTTTGCAGGTAAACAGCTTGAAGATGGCAGGACGTTGGCAGATTATAAC 17723 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||| || || ||||| || || Sbjct 17722 ATTCAGAAGGAGTCTACACTCCA 17700 >seq8889 Length=9065 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/205 (69%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| ||||| || || || |||||||| || || ||| |||| Sbjct 2071 AATGCAGAT-TTTGTTAAAACTTTGACAGGAAAAACCATCACTTTGGAGGTGGAGTCTTC 2129 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| || || || || ||||| | || ||| || Sbjct 2130 TGATACTATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGGATCCCACCAGACCA 2189 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||||||||||||| || | || ||||| || Sbjct 2190 GCAGAGGCTCATCTTTGCCGGTAAACAATTGGAAGATGGACGGACACTTGCTGATTACAA 2249 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||| || || ||||| || ||| Sbjct 2250 CATTCAGAAGGAGTCTACCCTTCAC 2274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425300718733425