Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq20014 536 4e-148 seq2978 421 2e-113 seq2990 385 1e-102 seq18988 80.6 8e-11 >seq20014 Length=5322 Score = 536 bits (594), Expect = 4e-148 Identities = 714/987 (72%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| ||||| || ||||||||||| || ||||||||||| | |||||||| Sbjct 937 AGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 996 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| || | || | ||| | | || | || Sbjct 997 AGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTACTGA 1056 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || |||||||||||| ||| || | || || | Sbjct 1057 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAA 1116 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || ||||||||||| | ||||||||||| | | ||||| || Sbjct 1117 CCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAA 1176 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || || ||||| || || |||||||| || Sbjct 1177 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATAAGT 1236 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | ||| ||| ||| || || ||||| || Sbjct 1237 TTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCT 1296 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | || || || | | || ||||||||| |||| | || |||||||| Sbjct 1297 GATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 1356 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || || || ||||| || || || ||||||||||| ||||| || || |||||||| Sbjct 1357 ACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 1416 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | |||||| ||||||||||| ||| || ||||||||||||||||| || || ||||| Sbjct 1417 AATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTG 1476 Query 18374 TCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGC 18430 |||| || || | | ||||| || || || |||||||| || || || ||||| || Sbjct 1477 ACCAATTGGGTAGATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGAATATGC 1533 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 |||| |||||| || |||||||| || | ||||||||||||| | || |||||||| Sbjct 1534 AACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1593 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 | || | || | | ||||| | ||||| |||| ||| || || || || ||||| Sbjct 1594 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAA 1653 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 ||| || || | | ||| |||||||| |||||||| || || | ||| || || ||| Sbjct 1654 CCATTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGA 1713 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 | || | || || || || || || ||||||||||| |||| | ||| || ||||| Sbjct 1714 AGTAGGAATAATGGCACCCGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGG 1773 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730 |||||||||||||| || || || ||||||||||||| || || || | |||| | | Sbjct 1774 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA 1833 Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || |||||| || | | ||||||||| | || |||||||| || | ||| || ||||| Sbjct 1834 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTT 1893 Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||||| ||| || Sbjct 1894 TTCGGTGCTGGTTATCCAGTTACAGAA 1920 >seq2978 Length=1535 Score = 421 bits (466), Expect = 2e-113 Identities = 649/906 (72%), Gaps = 19/906 (2%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGT-GCATAACTTCAAAGCCAAGGT 17892 |||||| ||||| ||||| || ||||||||||| || | |||||||||| | ||||||| Sbjct 912 AGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATTGCATAACTTCCATACCAAGGT 853 Query 17893 TAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGG 17952 |||| | ||| | | |||||||| || | || | ||| | | || | | Sbjct 852 TAGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTACTG 793 Query 17953 ATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAA 18012 |||||||||| ||||| ||||| || || |||||||||||| ||| || | || || | Sbjct 792 ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGA 733 Query 18013 GCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAA 18072 ||| || | || ||||||||||| | ||||||||||| | | ||||| | Sbjct 732 ACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGA 673 Query 18073 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACG 18132 | |||||||| |||||||| | || ||||| || || ||||| || || |||||||| | Sbjct 672 AACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATAAG 613 Query 18133 TCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTC 18192 | ||||||||||| || ||| | || || | ||| ||| ||| || || ||||| | Sbjct 612 TTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCC 553 Query 18193 TAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 18252 | || | || || || | | || ||||||||| |||| | || ||||||| Sbjct 552 TGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATA 493 Query 18253 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATA 18312 | || || || || ||||| || || || ||||||||||| ||||| || || ||||||| Sbjct 492 CACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA 433 Query 18313 CGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 18372 | | |||||| ||||||||||| ||| || ||||||||||||||||| || || |||| Sbjct 432 CAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTT 373 Query 18373 GTCCAAAAGGATA-AACGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAG 18429 | |||| || || | | ||||| || || || |||||||| || || || ||||| | Sbjct 372 GACCAATTGGGTAGATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGAATATG 316 Query 18430 CAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGT 18489 ||||| |||||| || |||||||| || | ||||||||||||| | || ||||||| Sbjct 315 CAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 256 Query 18490 AAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC-GTTATAT 18548 || || | || | | ||||| | ||||| |||| ||| || || || || ||| Sbjct 255 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCTATTGTAT 196 Query 18549 AACCACTC-GTCGAGGGTTGCAG-CTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGT 18606 ||||| || || | | ||| | ||||||| |||||||| || || | ||| || || Sbjct 195 AACCATTCATTCAACAGATGCTGCCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTG 136 Query 18607 TAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCAT-AGAGTAAG-GCTCC--T 18662 ||| | || | || || || || || || ||| |||||| | |||||| | ||| | Sbjct 135 CAGAAGTAGGAATAATGGCACCCGAAATAATATTG-TTCCATAAAAGTAAGAGATCCAGT 77 Query 18663 GAGAC-AGGCTCACG-AATACC-ATCTATGTCAACGGGAGGAG-CAGCAACAAATGCAAT 18718 | || ||| ||||| |||||| ||| || || || ||||||| |||||| || || || Sbjct 76 AAAACTAGGTTCACGTAATACCTATCAATATCTACTGGAGGAGTCAGCAATGAAGGCGAT 17 Query 18719 CAAAAA 18724 | ||| Sbjct 16 AATAAA 11 >seq2990 Length=15620 Score = 385 bits (426), Expect = 1e-102 Identities = 515/710 (73%), Gaps = 7/710 (1%) Strand=Plus/Minus Query 18112 GAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAG 18171 |||| || || |||||||| || ||||||||||| || ||| | || || | ||| || Sbjct 15536 GAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAG 15477 Query 18172 ACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAG 18231 | ||| || || ||||| || || | || || || | | || ||||||||| Sbjct 15476 ATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCAC 15417 Query 18232 CGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGA 18291 |||| | || |||||||| || || || || ||||| || || || |||||||||| Sbjct 15416 TAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGA 15357 Query 18292 TATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCA 18351 | ||||| || || |||||||| | |||||| ||||||||||| ||| || ||||||| Sbjct 15356 TGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCA 15297 Query 18352 TACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAG 18408 |||||||||| || || ||||| |||| || || | | ||||| || || || |||| Sbjct 15296 TACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAA-AC--AGCAGTCGCAG 15240 Query 18409 CTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAA 18468 |||| || || || ||||| |||||| |||||| || |||||||| || | |||||| Sbjct 15239 CTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAA 15180 Query 18469 GTTCCC-ATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGT 18527 |||||| | | || ||||||||| || | || | | ||||| | ||||| ||| Sbjct 15179 GTTCCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGT 15120 Query 18528 TGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 18587 | ||| || || || || |||||||| || || | | ||| |||||||| |||||||| Sbjct 15119 TCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCTGCTTCCCATATTGGGTAA 15060 Query 18588 AAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCA 18647 || || | ||| || || ||| | || | || || || || || || ||||||||| Sbjct 15059 AAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCA 15000 Query 18648 TAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCA 18707 || |||| | ||| || ||||| |||||||||||||| || || || |||||||||||| Sbjct 14999 TAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCA 14940 Query 18708 ACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCA 18767 | || || || | |||| | | || |||||| || | | ||||||||| | || ||| Sbjct 14939 ATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACGCCA 14880 Query 18768 AACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 ||||| || | ||| || ||||| | || || || | ||||| ||| || Sbjct 14879 AACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 14830 >seq18988 Length=14164 Score = 80.6 bits (88), Expect = 8e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| ||||| || ||||||||||| || ||||||||||| | |||||||| Sbjct 7992 AGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 7933 Query 17894 AGCTCTGTTGAGTACGTCAGCCCA 17917 ||| | ||| | | |||||||| Sbjct 7932 AGCACGGTTAATGATATCAGCCCA 7909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151282327112050