Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq20014 515 1e-141 seq2978 428 1e-115 seq2990 327 3e-85 >seq20014 Length=5322 Score = 515 bits (570), Expect = 1e-141 Identities = 687/952 (72%), Gaps = 2/952 (0%) Strand=Plus/Plus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 ||| || ||||| ||||| || || || |||||||| || || | |||||||| ||||| Sbjct 943 GTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACG 1002 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595 ||||| || |||||||| ||||| || || | || | | | | | | |||||||| Sbjct 1003 GTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTACTGATTGGTT 1062 Query 21596 AAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAAT 21655 || ||||||||||| | |||||||||||| || | || | |||| ||||| || Sbjct 1063 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 1122 Query 21656 ACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGC 21715 |||||| |||||||| ||||| || |||||||| | | ||| || || || || ||||| Sbjct 1123 ACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGC 1182 Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775 |||||||||||| | || |||||||| |||||||| || || ||||| ||||| ||||| Sbjct 1183 ATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATAAGTTTCTTC 1242 Query 21776 CTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835 |||||||| || ||||||| | ||| || | | ||| || || || | || | Sbjct 1243 TTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 1302 Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGC 21895 || || |||| ||| ||||||||| || | || || ||||| || || Sbjct 1303 ACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGC 1362 Query 21896 CACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCAT 21955 || || ||||||||||| || |||||||| || ||||||||||||||||| || | ||| Sbjct 1363 TACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 1422 Query 21956 GTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAA 22015 | ||||||| || || || || || | |||||| |||||||||| || || |||| Sbjct 1423 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAAT 1482 Query 22016 CGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGAT 22075 || || | | ||| |||||||||||||| || |||||||| || || |||||| || Sbjct 1483 TGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAAT 1542 Query 22076 CCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGAC 22135 ||| || | ||| || || || | |||||||||||||| || ||||||||| | || Sbjct 1543 CCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTAC 1602 Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195 |||| | |||||| | || | |||| | ||||| || ||||| | ||||||||| Sbjct 1603 ACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATC 1662 Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255 || | || |||||||| |||||||| || || | || || || | | |||| Sbjct 1663 AACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAAT 1722 Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315 | ||| || || || || ||||| ||||| | || || |||| || ||||| || || Sbjct 1723 AATGGCACCCGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAAT 1782 Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG- 22374 ||||| || || || || || || ||| |||||||||||||| || || |||| Sbjct 1783 ACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGT 1842 Query 22375 CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 ||| ||| | || ||||| | || || |||||||| | ||||||||||| Sbjct 1843 CAATAAGGTA-GGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTT 1893 >seq2978 Length=1535 Score = 428 bits (474), Expect = 1e-115 Identities = 640/898 (71%), Gaps = 13/898 (1%) Strand=Plus/Minus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCAT-GCATCACCTCAAAGCCAAGGTTGGCAC 21534 ||| || ||||| ||||| || || || |||| |||| || || | |||||||| |||| Sbjct 906 GTCTAGAGGGAAATTGTGAGCATTACGTTCATTGCATAACTTCCATACCAAGGTTAGCAC 847 Query 21535 GGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGT 21594 |||||| || |||||||| ||||| || || | || | | | | | | ||||||| Sbjct 846 GGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTACTGATTGGT 787 Query 21595 TAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAA 21654 | || ||||||||||| | |||||||||||| || | || | |||| ||||| | Sbjct 786 TGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGA 727 Query 21655 TACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAG 21714 ||||||| |||||||| ||||| || |||||||| | | ||| || || || || |||| Sbjct 726 TACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAG 667 Query 21715 CATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTT 21774 ||||||||||||| | || |||||||| |||||||| || || ||||| ||||| |||| Sbjct 666 CATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATAAGTTTCTT 607 Query 21775 CCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGA 21834 | |||||||| || ||||||| | ||| || | | ||| || || || | || | Sbjct 606 CTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCA 547 Query 21835 GTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGG 21894 || || |||| ||| ||||||||| || | || || ||||| || | Sbjct 546 AACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAG 487 Query 21895 CCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCA 21954 | || || ||||||||||| || |||||||| || ||||||||||||||||| || | || Sbjct 486 CTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCA 427 Query 21955 TGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAA 22014 || ||||||| || || || || || | |||||| |||||||||| || || |||| Sbjct 426 TGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAA 367 Query 22015 ACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGA 22074 || || | | ||| |||||||||||||| || |||||||| || || |||||| | Sbjct 366 TTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAA 307 Query 22075 TCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGA 22134 |||| || | ||| || || || | |||||||||||||| || ||||||||| | | Sbjct 306 TCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTA 247 Query 22135 CGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCC-GTTGTACAGCCATTCA 22193 | |||| | |||||| | || | |||| | ||||| || ||||| | ||||||| Sbjct 246 CACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCTATTGTATAACCATTCA 187 Query 22194 -TCAAGTGTAGCAG-CTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCG 22251 |||| | || | ||||||| |||||||| || || | || || || | | | Sbjct 186 TTCAACAGATGCTGCCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAG 127 Query 22252 GAACGACGGCTCCTGATATGATGTTGTTACCATACAA--CAGGGAGCCAGCGA---CGGG 22306 ||| | ||| || || || || ||||| ||||| || || || |||| | || Sbjct 126 GAATAATGGCACCCGAAATAATATTGTT-CCATAAAAGTAAGAGATCCAGTAAAACTAGG 68 Query 22307 TTCTCGGATT--CCATCGATGTCAACAGGTGGTG-CGCCAACAAAGGCGATAATAAAA 22361 ||| || | | | ||| || || || || || | | ||| ||||||||||||||| Sbjct 67 TTCACGTAATACCTATCAATATCTACTGGAGGAGTCAGCAATGAAGGCGATAATAAAA 10 >seq2990 Length=15620 Score = 327 bits (362), Expect = 3e-85 Identities = 496/699 (71%), Gaps = 5/699 (1%) Strand=Plus/Minus Query 21732 CGACCAAAATAG-CCGT-GAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACT 21789 || |||||||| |||| |||| || || ||||| ||||| ||||| |||||||| || Sbjct 15554 CGGCCAAAATAAACCGTAGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATC 15495 Query 21790 TGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCA 21849 ||||||| | ||| || | | ||| || || || | || | || || |||| Sbjct 15494 TGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCA 15435 Query 21850 GGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGT 21909 ||| ||||||||| || | || || ||||| || || || || ||||||| Sbjct 15434 AAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGT 15375 Query 21910 GAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGC 21969 |||| || |||||||| || ||||||||||||||||| || | |||| ||||||| || | Sbjct 15374 GAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTAC 15315 Query 21970 CGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGA 22029 | || || || | |||||| |||||||||| || || |||| || || | | || Sbjct 15314 CAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGA 15255 Query 22030 ACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCC 22089 | |||||||||||||| || |||||||| || || |||||| ||||| || | ||| | Sbjct 15254 AAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATAC 15195 Query 22090 CTAGTCGATAGCTAAGTT-CCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAG 22148 | || || | ||||||| ||||||| || ||||||||| | || |||| | |||| Sbjct 15194 CCAGACGGAAACTAAGTTCCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAG 15135 Query 22149 TGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCT 22208 || | || | |||| | ||||| || ||||| | ||||||||||| | || ||| Sbjct 15134 TGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCTGCT 15075 Query 22209 TCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGAT 22268 ||||| |||||||| || || | || || || | | |||| | ||| || || Sbjct 15074 TCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAA 15015 Query 22269 ATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCA 22328 || || ||||| ||||| | || || |||| || ||||| || || ||||| || || Sbjct 15014 ATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCT 14955 Query 22329 ACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGG 22387 || || || || ||| |||||||||||||| || || |||| ||| ||| | || Sbjct 14954 ACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA-GG 14896 Query 22388 AATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 ||||| | || || |||||||| | ||||||||||| Sbjct 14895 GATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTT 14857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146173145383500