Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq14165 107 2e-18 seq4091 107 2e-18 seq12084 91.5 2e-13 >seq14165 Length=56756 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTCAACG 75186 ||||||| ||| | || || ||||||| ||||||||||||||| || || ||||| Sbjct 35013 CGGGACTTTGACTATGATTTCTTTGGTTTCAAAACCCTTGAGA-GATCTTATCTTTTGAA 34955 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || |||| | | | |||| || || ||||||| ||| | || || | || || Sbjct 34954 GATCAATGGGAAGGTTGTAGAAAGACCTCAACACATGTTAATGAGAGTTGCTGTTGGGAT 34895 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 || ||| || ||||||||||| | |||||||| || |||||| || | ||| Sbjct 34894 TCATAAGGATGATATTGATTCTGTTCTCAAGACATACCACTTGATGTCACAGAGATGGTT 34835 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || || ||| | || ||||| |||||||| || |||||||| || || Sbjct 34834 CACCCATGCATCTCCCACCCTTTTCAATGCCGGAACACCAAGGCCTCA 34787 >seq4091 Length=20028 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTCAACG 75186 ||||||| ||| | || || ||||||| ||||||||||||||| || || ||||| Sbjct 16730 CGGGACTTTGACTATGATTTCTTTGGTTTCAAAACCCTTGAGA-GATCTTATCTTTTGAA 16672 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || |||| | | | |||| || || ||||||| ||| | || || | || || Sbjct 16671 GATCAATGGGAAGGTTGTAGAAAGACCTCAACACATGTTAATGAGAGTTGCTGTTGGGAT 16612 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 || ||| || ||||||||||| | |||||||| || |||||| || | ||| Sbjct 16611 TCATAAGGATGATATTGATTCTGTTCTCAAGACATACCACTTGATGTCACAGAGATGGTT 16552 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || || ||| | || ||||| |||||||| || |||||||| || || Sbjct 16551 CACCCATGCATCTCCCACCCTTTTCAATGCCGGAACACCAAGGCCTCA 16504 >seq12084 Length=12162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| | || |||| | || || || | ||| ||||| Sbjct 7152 CCTGGAACCGGTAAGACCCTGTTAGCTAGAGCGGTTGCAGGGGAGGCTGGTGTGCCATTT 7211 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||| |||| | | ||||| ||| ||||||| ||||| ||||| |||||| Sbjct 7212 TTTTCGTGTGCTGCTTCTGAATTTGTTGAGTTGTTTGTGGGTGTTGGTGCATCTAGGGTT 7271 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | ||| | ||||||| || ||| ||| |||||||| |||||||||||||| Sbjct 7272 AGGGATTTGTTTGAAAAGGCGAAATCAAAAGCACCTTGTATTGTATTCATTGATGAGATA 7331 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATG-CCAGCAAATGACGAGAGAGAACA 175553 || || ||||| | ||| | | || ||| || | | |||||| ||||| || || Sbjct 7332 GACGCAGTGGGGAGGCAGAGAGGGGCGGGT-TTAGGAGGTGGAAATGATGAGAGGGAGCA 7390 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || ||||| | | || || |||||||| ||| Sbjct 7391 AACCATCAATCAGTTGTTGACTGAAATGGATGGTTTT 7427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596419898316000