Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq20014 526 3e-144 seq2978 434 1e-116 seq2990 370 1e-97 >seq20014 Length=5322 Score = 526 bits (582), Expect = 3e-144 Identities = 703/975 (72%), Gaps = 2/975 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||||||||| ||||| ||||| ||||| | ||||||||||||||||||||| | ||| Sbjct 938 GCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 997 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| || ||| | || | | |||||| |||||| Sbjct 998 GCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTACTGAT 1057 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| || ||||| |||| ||||| | || ||| ||| Sbjct 1058 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 1117 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | || ||| || || | | ||| |||||||| || | | | | |||||| ||| Sbjct 1118 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 1177 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| |||||||| |||| ||||| || || ||||| || || |||||||| || Sbjct 1178 CTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATAAGT 1236 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 |||||||||||||| || | ||||| | ||| ||| || | ||| || || || || Sbjct 1237 TTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCT 1296 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || |||||||| ||||||||||| || || || || ||||| | Sbjct 1297 GATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 1356 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || |||||||| Sbjct 1357 ACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 1416 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 | ||||||||| || ||||||||||| ||||||||||| |||||||| || || || Sbjct 1417 AATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTG 1476 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||||| ||| || | ||||| || || ||||| | || ||||| |||||| || Sbjct 1477 ACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAAC 1536 Query 8490 ACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGC 8549 | ||||| |||| |||||| | ||| | | ||||||| | |||||||||| Sbjct 1537 AGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACA 1596 Query 8550 AGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCA 8609 || | |||| | |||||| | | || | | ||| ||||| || || || ||||| Sbjct 1597 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCA 1656 Query 8610 CTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGA 8669 ||||| | | || |||||||| || || || || || || || ||||| |||| Sbjct 1657 TTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGT 1716 Query 8670 TGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTC 8729 |||| | ||||| || || || ||||||||||| | | || || | ||||||||| Sbjct 1717 AGGAATAATGGCACCCGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTC 1776 Query 8730 ACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGC 8789 ||||||||| || ||||| || || ||||||||||| || || | ||||| || || Sbjct 1777 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGT 1836 Query 8790 AGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTT 8849 || | || ||| ||| ||||| | ||| |||||||| || | ||||| | ||| | Sbjct 1837 TGCGGTCAATAAGGTAGGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTTTTC 1896 Query 8850 TGTACTTGTAACCCA 8864 || || || | ||| Sbjct 1897 GGTGCTGGTTATCCA 1911 >seq2978 Length=1535 Score = 434 bits (480), Expect = 1e-116 Identities = 647/903 (72%), Gaps = 15/903 (2%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCAT-GCATAACTTCCATACCTAAGTT 7949 |||||||||| ||||| ||||| ||||| | ||||| |||||||||||||||| | ||| Sbjct 911 GCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATTGCATAACTTCCATACCAAGGTT 852 Query 7950 TGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGA 8009 || | ||| | | ||| |||| || ||| | || | | |||||| ||||| Sbjct 851 AGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTACTGA 792 Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA 8069 |||||| || || || || || ||||| || ||||| |||| ||||| | || ||| || Sbjct 791 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAA 732 Query 8070 CCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AA 8128 ||| | || ||| || || | | ||| |||||||| || | | | | |||||| || Sbjct 731 CCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAA 672 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 || | ||||| |||||||| |||| ||||| || || ||||| || || |||||||| | Sbjct 671 ACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATAAG 613 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTC 8248 | |||||||||||||| || | ||||| | ||| ||| || | ||| || || || | Sbjct 612 TTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCC 553 Query 8249 TGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA 8308 |||| | | ||| || || |||||||| ||||||||||| || || || || ||||| | Sbjct 552 TGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATA 493 Query 8309 TACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATA 8368 ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || ||||||| Sbjct 492 CACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA 433 Query 8369 CGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCT 8428 | | ||||||||| || ||||||||||| ||||||||||| |||||||| || || | Sbjct 432 CAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTT 373 Query 8429 GACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTA 8488 |||||| ||| || | ||||| || || ||||| | || ||||| |||||| | Sbjct 372 GACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAA 313 Query 8489 CACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAG 8548 || ||||| |||| |||||| | ||| | | ||||||| | |||||||||| Sbjct 312 CAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAAC 253 Query 8549 CAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCC-GTTATACAAC 8607 || | |||| | |||||| | | || | | ||| ||||| || || || ||| Sbjct 252 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCTATTGTATAAC 193 Query 8608 CACTCA-TCTAATGTGGCAG-CTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGG 8665 || ||| || | | || | ||||||| || || || || || || || ||||| | Sbjct 192 CATTCATTCAACAGATGCTGCCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAG 133 Query 8666 AAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACA--TGAATGAACCTGCAA- 8722 ||| |||| | ||||| || || || ||| ||||||| | | | || || | || Sbjct 132 AAGTAGGAATAATGGCACCCGAAATAATATTG-TTCCATAAAAGTAAGAGATCCAGTAAA 74 Query 8723 --CAGGTTCACG-AATACC-GTCGATATCGACAGGTGGAG-CAGCAATAAATGCCACGAT 8777 ||||||||| |||||| || ||||| || || |||| ||||||| || || | || Sbjct 73 ACTAGGTTCACGTAATACCTATCAATATCTACTGGAGGAGTCAGCAATGAAGGCGATAAT 14 Query 8778 AAA 8780 ||| Sbjct 13 AAA 11 >seq2990 Length=15620 Score = 370 bits (410), Expect = 1e-97 Identities = 503/699 (72%), Gaps = 3/699 (0%) Strand=Plus/Minus Query 8168 GAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAG 8227 |||| || || |||||||| || |||||||||||||| || | ||||| | ||| || Sbjct 15536 GAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAG 15477 Query 8228 ACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCAC 8287 | || | ||| || || || ||||| | | ||| || || |||||||| |||||||||| Sbjct 15476 ATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCAC 15417 Query 8288 TGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAA 8347 | || || || || ||||| | ||| ||||| ||| ||| || || || |||||||| | Sbjct 15416 TAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGA 15357 Query 8348 TGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCA 8407 |||| ||||| || |||||||| | ||||||||| || ||||||||||| |||||||||| Sbjct 15356 TGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCA 15297 Query 8408 TTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAG 8467 | |||||||| || || ||||||| ||| || | ||||| || || ||||| | Sbjct 15296 TACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTG 15237 Query 8468 ATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACT 8527 || ||||| |||||| ||| ||||| |||| |||||| | ||| | ||| | Sbjct 15236 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGG-AAACTAAGT 15178 Query 8528 --CCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTG 8585 |||||| | |||||||||| || | |||| | |||||| | | || | | Sbjct 15177 TCCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTC 15118 Query 8586 ATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAA 8645 ||| ||||| || || || ||||| ||||| | | || |||||||| || || || || Sbjct 15117 ATAAGGACCACCATTGTATAACCATTCATCAACAGATGCTGCTTCCCATATTGGGTAAAA 15058 Query 8646 GTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATA 8705 || || || ||||| |||| |||| | ||||| || || || ||||||||||| Sbjct 15057 ATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCATA 14998 Query 8706 CATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAAT 8765 | | || || | |||||||||||||||||| || ||||| || || ||||||||||| Sbjct 14997 AAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAAT 14938 Query 8766 AAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAA 8825 || || | ||||| || || || | || ||| ||| ||||| | ||| ||||| Sbjct 14937 GAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACGCCAAA 14878 Query 8826 CCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||| || | ||||| | ||| | || || || | ||| Sbjct 14877 CCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCA 14839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615707857029000