Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq20014 515 1e-141
seq2978 428 1e-115
seq2990 327 3e-85
>seq20014
Length=5322
Score = 515 bits (570), Expect = 1e-141
Identities = 687/952 (72%), Gaps = 2/952 (0%)
Strand=Plus/Minus
Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319
||||||||||| | |||||||| || || | ||||| || | ||| ||| |||| ||
Sbjct 1893 AACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCC-TACCTTATTGACCGCAAC 1835
Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379
|| |||||||||||||| ||| || || || || || || ||||| || || ||
Sbjct 1834 TTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1775
Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439
||| || |||| || || | ||||| ||||| || || || || ||| | |||| |
Sbjct 1774 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCGGGTGCCATTATTCCTAC 1715
Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499
| || || || | || || |||||||| |||||||| || | ||||||||||
Sbjct 1714 TTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTGTTGATGAATG 1655
Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559
| | ||||| || ||||| | |||| | || | |||||| | |||| || |
Sbjct 1654 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1595
Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619
||||||||| || |||||||||||||| | || || || ||| | || ||||| |||
Sbjct 1594 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGT 1535
Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679
||| || || |||||||| || |||||||||||||| ||| | | || || |||| ||
Sbjct 1534 TGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCA 1475
Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739
|| |||||||||| |||||| | || || || || || ||||||| |||| | ||
Sbjct 1474 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 1415
Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799
||||||||||||||||| || |||||||| || ||||||||||| || || || || ||
Sbjct 1414 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGT 1355
Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859
||| || || | || ||||||||| ||| |||| || || | || |
Sbjct 1354 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAG 1295
Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919
|| || || ||| | | || ||| | ||||||| || |||||||| ||||| ||
Sbjct 1294 GGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 1235
Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979
||| ||||| || || |||||||| |||||||| || | ||||||||||||||||| ||
Sbjct 1234 TTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 1175
Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039
|| || || ||| | | |||||||| || ||||| |||||||| |||||||| |||||
Sbjct 1174 CAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 1115
Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099
|||| | || | || |||||||||||| | ||||||||||| || ||||||||
Sbjct 1114 CACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 1055
Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159
| | | | | | || | || || ||||| |||||||| || |||||||||| ||
Sbjct 1054 AGTAGTTGATAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAACCGTGCTAA 995
Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGAC 42211
|||||| | || || |||||||| || || || ||||| ||||| || |||
Sbjct 994 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGAC 943
>seq2978
Length=1535
Score = 428 bits (474), Expect = 1e-115
Identities = 640/898 (71%), Gaps = 13/898 (1%)
Strand=Plus/Plus
Query 41326 TTTTATTATCGCCTTTGTTGGCG-CACCACCTGTTGACATCGATGG--AATCCGAGAACC 41382
||||||||||||||| ||| | | || || || || || ||| | | | || |||||
Sbjct 10 TTTTATTATCGCCTTCATTGCTGACTCCTCCAGTAGATATTGATAGGTATTACGTGAACC 69
Query 41383 CG---TCGCTGGCTCCCTG--TTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437
| |||| || || || ||||| ||||| || || || || ||| | ||||
Sbjct 70 TAGTTTTACTGGATCTCTTACTTTTATGG-AACAATATTATTTCGGGTGCCATTATTCCT 128
Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAG-CTGCTACACTTGA-TG 41495
| | || || || | || || |||||||| ||||||| | || | |||| ||
Sbjct 129 ACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGGCAGCATCTGTTGAATG 188
Query 41496 AATGGCTGTACAAC-GGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTC 41554
||||| | ||||| || ||||| | |||| | || | |||||| | |||| ||
Sbjct 189 AATGGTTATACAATAGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 248
Query 41555 TTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATC 41614
| ||||||||| || |||||||||||||| | || || || ||| | || |||||
Sbjct 249 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATT 308
Query 41615 TTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTT 41674
|||||| || || |||||||| || |||||||||||||| ||| | | || || ||
Sbjct 309 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATT 368
Query 41675 GGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATG 41734
|| || || |||||||||| |||||| | || || || || || ||||||| ||||
Sbjct 369 GGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATG 428
Query 41735 CTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCC 41794
| || ||||||||||||||||| || |||||||| || ||||||||||| || || ||
Sbjct 429 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCT 488
Query 41795 GGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTC 41854
|| ||||| || || | || ||||||||| ||| |||| || || |
Sbjct 489 GGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 548
Query 41855 ATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAA 41914
|| | || || || ||| | | || ||| | ||||||| || |||||||| |||
Sbjct 549 ATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAA 608
Query 41915 GAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCT 41974
|| ||||| ||||| || || |||||||| |||||||| || | |||||||||||||||
Sbjct 609 GAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCT 668
Query 41975 AGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATT 42034
|| || || || || ||| | | |||||||| || ||||| |||||||| ||||||||
Sbjct 669 AGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 728
Query 42035 TGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAAC 42094
||||| |||| | || | || |||||||||||| | ||||||||||| || |||
Sbjct 729 TGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 788
Query 42095 CAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGT 42154
||||| | | | | | | || | || || ||||| |||||||| || ||||||||
Sbjct 789 CAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAACCGT 848
Query 42155 GCCAACCTTGGCTTTGAGGTGATGC-ATGAGCGGAACGCACACAACTTCCCGCTTGAC 42211
|| |||||||| | || || |||| |||| || || || ||||| ||||| || |||
Sbjct 849 GCTAACCTTGGTATGGAAGTTATGCAATGAACGTAATGCTCACAATTTCCCTCTAGAC 906
>seq2990
Length=15620
Score = 327 bits (362), Expect = 3e-85
Identities = 496/699 (71%), Gaps = 5/699 (1%)
Strand=Plus/Plus
Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319
||||||||||| | |||||||| || || | ||||| || | ||| ||| |||| ||
Sbjct 14857 AACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCC-TACCTTATTGACCGCAAC 14915
Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379
|| |||||||||||||| ||| || || || || || || ||||| || || ||
Sbjct 14916 TTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 14975
Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439
||| || |||| || || | ||||| ||||| || || || || ||| | |||| |
Sbjct 14976 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCGGGTGCCATTATTCCTAC 15035
Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499
| || || || | || || |||||||| |||||||| || | ||||||||||
Sbjct 15036 TTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTGTTGATGAATG 15095
Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559
| | ||||| || ||||| | |||| | || | |||||| | |||| || |
Sbjct 15096 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 15155
Query 41560 TTACATGGGACGAGAGTGGG-AACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTG 41618
||||||||| || ||||||| ||||||| | || || || ||| | || ||||| ||
Sbjct 15156 TTACATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTG 15215
Query 41619 TTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGAC 41678
|||| || || |||||||| || |||||||||||||| ||| | | || || |||| |
Sbjct 15216 TTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTC 15275
Query 41679 AGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGG 41738
| || |||||||||| |||||| | || || || || || ||||||| |||| | |
Sbjct 15276 AAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTG 15335
Query 41739 TGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCG 41798
| ||||||||||||||||| || |||||||| || ||||||||||| || || || || |
Sbjct 15336 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTG 15395
Query 41799 TATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTC 41858
|||| || || | || ||||||||| ||| |||| || || | ||
Sbjct 15396 TATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCA 15455
Query 41859 GTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGA 41918
| || || || ||| | | || ||| | ||||||| || |||||||| ||||| |
Sbjct 15456 GGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAGAAA 15515
Query 41919 CTTACAATATTGTTGCTGCTC-ACGG-CTATTTTGGTCG 41955
|||| ||||| || || |||| |||| |||||||| ||
Sbjct 15516 CTTATAATATCGTAGCCGCTCTACGGTTTATTTTGGCCG 15554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146179543857800
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