Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq20014 549 5e-152 seq2978 461 2e-125 seq2990 369 1e-97 seq16002 98.7 3e-16 seq10006 84.2 6e-12 seq9089 84.2 6e-12 >seq20014 Length=5322 Score = 549 bits (608), Expect = 5e-152 Identities = 720/989 (73%), Gaps = 6/989 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || || | ||||||||||| |||| |||||| Sbjct 1929 TGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 1870 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 || || ||||||| |||| || | | | || || | ||| |||||| |||| |||| Sbjct 1869 GGCGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCA 1812 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || | Sbjct 1811 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 1752 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| ||||| || || || |||||| | | |||| | || || || | |||| Sbjct 1751 ATGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATT 1692 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| | |||| |||||| | |||||||| || |||||| Sbjct 1691 TTTACCCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATG 1632 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 | || | || | |||||| | | ||| | | |||| |||| || || ||||||| Sbjct 1631 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAC 1572 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 1571 TTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 1512 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | |||||||| || ||| | |||| ||| |||| ||||| ||||| ||||| |||| Sbjct 1511 CTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGC 1452 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || ||||| ||||| |||||||||||| | || ||||||||||| || ||||| | Sbjct 1451 CTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCC 1392 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || || || ||||| || || || || ||||| || || || | || | Sbjct 1391 TTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTG 1332 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | | || |||||| | | | | ||||| || ||||| ||| Sbjct 1331 CTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 1272 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 || | || |||| ||||||||||| || || |||||||| || || || || || | Sbjct 1271 CTAACGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCACG 1212 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCAC 43056 |||| ||||| || | |||||||||||||| | |||| || || ||| ||||| || Sbjct 1211 GTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCTTTACAT 1153 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| || || |||||||| || || || || ||||||||| || | || |||| ||| Sbjct 1152 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 1093 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 ||||| || ||| | |||||||| || || ||||||||| | ||||||| ||| | | Sbjct 1092 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGCCGT 1033 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || || |||||||||||||| | || ||||| |||||||| | || || ||||| Sbjct 1032 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 973 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGA 43265 || || ||||| || || ||||| || || Sbjct 972 GAACGTAATGCTCACAATTTCCCTCTAGA 944 >seq2978 Length=1535 Score = 461 bits (510), Expect = 2e-125 Identities = 651/898 (72%), Gaps = 15/898 (2%) Strand=Plus/Plus Query 42381 TTTTATTGTCGCTTTCATTGCTGCC-CCTCCGGTAGACATTGAT-GGCATT-CGTGAACC 42437 ||||||| |||| |||||||||| | ||||| ||||| |||||| || ||| |||||||| Sbjct 10 TTTTATTATCGCCTTCATTGCTGACTCCTCCAGTAGATATTGATAGGTATTACGTGAACC 69 Query 42438 T-GTCT--CTGGCTCTCTTC--TGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCT 42492 | || | |||| |||||| | ||||| ||||| || || || |||||| | | ||| Sbjct 70 TAGTTTTACTGGATCTCTTACTTTTATGG-AACAATATTATTTCGGGTGCCATTATTCCT 128 Query 42493 AGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCC-TTGAC-G 42550 | | || || || | ||||| || | || ||||||| || | | |||| | Sbjct 129 ACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGGCAGCATCTGTTGAATG 188 Query 42551 AATGGCTCTACAAT-GGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATC 42609 ||||| | |||||| || || |||||| | || | || | |||||| | | ||| | Sbjct 189 AATGGTTATACAATAGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 248 Query 42610 TTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATC 42669 | |||| |||| || || ||||||||| | ||| || || ||| | || ||||| Sbjct 249 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATT 308 Query 42670 TTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTT 42729 |||||| || || || ||||| || || |||||||| || ||| | |||| ||| || Sbjct 309 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATT 368 Query 42730 GGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATG 42789 || ||||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||| Sbjct 369 GGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATG 428 Query 42790 TTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCC 42849 | || ||||||||||| || ||||| |||||||| || || || ||||| || || || Sbjct 429 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCT 488 Query 42850 GGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTT 42909 || ||||| || || || | || |||||||||||| | | || |||||| | | Sbjct 489 GGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 548 Query 42910 GTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAG 42969 | | ||||| || ||||| ||| || | || |||| ||||||||||| || Sbjct 549 ATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAA 608 Query 42970 GAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCG 43029 || |||||||| || || || || || ||||| ||||| || | |||||||||||||| Sbjct 609 GAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGC- 667 Query 43030 TCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGAT 43088 | |||| || || ||| ||||| || ||||| || || |||||||| || || || || Sbjct 668 TAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTAT 727 Query 43089 TTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAA 43148 ||||||||| || | || |||| |||||||| || ||| | |||||||| || || || Sbjct 728 CTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAA 787 Query 43149 CCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCG 43208 ||||||| | ||||||| ||| | ||| || |||||||||||||| | || || Sbjct 788 CCAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAACCG 847 Query 43209 TGCCAACCTTGGCTTTGAGGTGATGC-ACGAGCGGAATGCACATAACTTCCCGCTTGA 43265 ||| |||||||| | || || |||| | || || ||||| || || ||||| || || Sbjct 848 TGCTAACCTTGGTATGGAAGTTATGCAATGAACGTAATGCTCACAATTTCCCTCTAGA 905 >seq2990 Length=15620 Score = 369 bits (408), Expect = 1e-97 Identities = 529/736 (72%), Gaps = 7/736 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || || | ||||||||||| |||| |||||| Sbjct 14821 TGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 14880 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 || || ||||||| |||| || | | | || || | ||| |||||| |||| |||| Sbjct 14881 GGCGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCA 14938 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || | Sbjct 14939 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 14998 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| ||||| || || || |||||| | | |||| | || || || | |||| Sbjct 14999 ATGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATT 15058 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| | |||| |||||| | |||||||| || |||||| Sbjct 15059 TTTACCCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATG 15118 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGG-AA 42636 | || | || | |||||| | | ||| | | |||| |||| || || |||| || Sbjct 15119 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGGAA 15178 Query 42637 CTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCT 42696 ||| | ||| || || ||| | || ||||| |||||| || || || ||||| || Sbjct 15179 CTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCA 15238 Query 42697 GCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATG 42756 || |||||||| || ||| | |||| ||| |||| ||||| ||||| ||||| ||| Sbjct 15239 GCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 15298 Query 42757 CCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATT 42816 ||||| || ||||| ||||| |||||||||||| | || ||||||||||| || ||||| Sbjct 15299 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATC 15358 Query 42817 CTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCA 42876 |||||||| || || || ||||| || || || || ||||| || || || | || Sbjct 15359 CTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGT 15418 Query 42877 GCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGC 42936 |||||||||||| | | || |||||| | | | | ||||| || ||||| ||| Sbjct 15419 GCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCT 15478 Query 42937 CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGC-A 42995 || | || |||| ||||||||||| || || |||||||| || || || || | | Sbjct 15479 GCTAACGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCTA 15538 Query 42996 TGG-TTACTTTGGACG 43010 || ||| ||||| || Sbjct 15539 CGGTTTATTTTGGCCG 15554 >seq16002 Length=11798 Score = 98.7 bits (108), Expect = 3e-16 Identities = 104/132 (79%), Gaps = 4/132 (3%) Strand=Plus/Plus Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTAC 42374 ||||||||||| |||| |||||||| || ||||||| |||| || | | |||| || Sbjct 3111 AACCGTCTTTAAATTGGATGGTTTGGCGTTTTGATGAT-CCCTACCTTATTGACTGCAAC 3169 Query 42375 CACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTG 42433 | ||| |||||| ||| |||||||||| ||||| ||||| |||||||| | ||||| Sbjct 3170 TTC-TGTATTTATTATCGTCGTCATTGCTGCTCCTCCAGTAGATATTGATGGTAGTCGTG 3228 Query 42434 AACCTGTCTCTG 42445 ||||||| |||| Sbjct 3229 AACCTGTTTCTG 3240 >seq10006 Length=49147 Score = 84.2 bits (92), Expect = 6e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 42408 TCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAA 42467 ||| ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| ||||| Sbjct 46031 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 46090 Query 42468 CATCATCTCTGGTGCC 42483 || || || |||||| Sbjct 46091 TATTATTTCGGGTGCC 46106 >seq9089 Length=51936 Score = 84.2 bits (92), Expect = 6e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 42408 TCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAA 42467 ||| ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| ||||| Sbjct 2132 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 2073 Query 42468 CATCATCTCTGGTGCC 42483 || || || |||||| Sbjct 2072 TATTATTTCGGGTGCC 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143498583126100