Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq20014 470 4e-128 seq2978 383 5e-102 seq2990 277 5e-70 >seq20014 Length=5322 Score = 470 bits (520), Expect = 4e-128 Identities = 696/984 (71%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||||||| || || || || ||||||||||| || ||||||||||| | || |||||| Sbjct 938 GCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 997 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| || |||| || | | ||| |||||||| Sbjct 998 GCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTACTGAT 1057 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | | Sbjct 1058 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 1117 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || |||||||| | |||||| ||| || ||| Sbjct 1118 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 1177 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || ||||| || || || |||||||| || Sbjct 1178 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATAAGTT 1237 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | || || | | ||||| ||||| Sbjct 1238 TCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTG 1297 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || |||||| || ||||||||| || || | || ||||| || Sbjct 1298 ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 1357 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||||||||| || || || || || || |||||||| Sbjct 1358 CCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 1417 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| ||||||||||| || || |||||||| |||||| ||| || ||||| Sbjct 1418 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGA 1477 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | || || | ||||| || || || || | | || |||| |||||||||| Sbjct 1478 CCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACA 1537 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| |||| ||| || || | | || |||||||||| | || || Sbjct 1538 GCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1597 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| |||| ||| || || |||||||||| ||| Sbjct 1598 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCAT 1657 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | | |||||||| || ||||||||||| | || || || ||| | Sbjct 1658 TCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTA 1717 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || || || || ||||||||||| || | || || || ||||| || ||| Sbjct 1718 GGAATAATGGCACCCGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 1777 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGT 26775 || || ||||| |||||||| || || || || |||||||| | ||||| ||| | ||| Sbjct 1778 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAGT 1836 Query 26776 GGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTC 26835 || | | |||| || ||||| | || || |||||||| | || |||||||| || Sbjct 1837 TGCGGTCAATAAGGTAGGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTTTTC 1896 Query 26836 AGTACTTGTAACCCACTCACAAAA 26859 || || || | ||| | ||| || Sbjct 1897 GGTGCTGGTTATCCAGTTACAGAA 1920 >seq2978 Length=1535 Score = 383 bits (424), Expect = 5e-102 Identities = 633/902 (70%), Gaps = 11/902 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGT-GCATAACTTCAAAGCCGAGGTT 25935 |||||||| || || || || ||||||||||| || | |||||||||| | || ||||| Sbjct 911 GCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATTGCATAACTTCCATACCAAGGTT 852 Query 25936 AGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGA 25995 ||| ||||| | | ||||||||| || |||| || | | ||| |||||||| Sbjct 851 AGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTACTGA 792 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | Sbjct 791 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAA 732 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| || |||||||| | |||||| ||| || || Sbjct 731 CCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAA 672 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || || |||| ||||| || ||||| || || || |||||||| || Sbjct 671 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATAAGT 612 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| ||||| || || | || || | || || | | ||||| ||||| Sbjct 611 TTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCT 552 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || |||||| || ||||||||| || || | || ||||| || Sbjct 551 GATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 492 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| || || ||| || ||||||||||| || || || || || || |||||||| Sbjct 491 ACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 432 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||| ||||| ||||||||||| || || |||||||| |||||| ||| || ||||| Sbjct 431 AATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTG 372 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | || || | ||||| || || || || | | || |||| ||||||||| Sbjct 371 ACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAAC 312 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535 | ||||| |||| ||| || || | | || |||||||||| | || || Sbjct 311 AGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACA 252 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCC-ATTGTATAGCC 26594 ||||| || | ||||||||| | | ||| |||| ||| || || || |||||||| || Sbjct 251 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCTATTGTATAACC 192 Query 26595 ACTCGTCCA--GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGA 26652 | || | || ||| ||||||| || ||||||||||| | || || || ||| Sbjct 191 ATTCATTCAACAGATGCTGCCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGA 132 Query 26653 GGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAA-CGAGCCGG--AAAC 26709 | || | | || || || || |||||||| | | | ||| || || | |||| Sbjct 131 AGTAGGAATAATGGCACCCGAAATAATATTGTTCCATAAAAGTAAGAGATCCAGTAAAAC 72 Query 26710 T-GGCTCACGT-ATGCC-ATCTATATCTACAGGCGGTG-CTGCGATGAAGGCAAGTATAA 26765 | || |||||| || || ||| |||||||| || || | | || |||||||| | |||| Sbjct 71 TAGGTTCACGTAATACCTATCAATATCTACTGGAGGAGTCAGCAATGAAGGCGATAATAA 12 Query 26766 AA 26767 || Sbjct 11 AA 10 >seq2990 Length=15620 Score = 277 bits (306), Expect = 5e-70 Identities = 499/723 (69%), Gaps = 5/723 (1%) Strand=Plus/Minus Query 26141 CCAAAGTAC-CCGT-GTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTAT 26198 ||||| || |||| | || || || |||||||| || ||||| ||||| || || | | Sbjct 15551 CCAAAATAAACCGTAGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGT 15492 Query 26199 AGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAAC 26258 | || | || || | | ||||| ||||| || | || || |||||| Sbjct 15491 AACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAG 15432 Query 26259 TTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGA 26318 || ||||||||| || || | || ||||| || ||||| || || ||| || | Sbjct 15431 AACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAA 15372 Query 26319 ATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAG 26378 |||||||||| || || || || || || |||||||| | ||| ||||| |||||||||| Sbjct 15371 ATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAG 15312 Query 26379 AGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACA 26438 | || || |||||||| |||||| ||| || ||||| || | || || | ||||| | Sbjct 15311 AAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAA 15252 Query 26439 CTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTA 26498 | || || || | | || |||| |||||||||| ||||| |||| ||| || | Sbjct 15251 CAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCA 15192 Query 26499 GTCTGTAAGATAGTTCCC-ACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGG 26557 | | | || ||||||| ||| | || || ||||| || | ||||||||| Sbjct 15191 GACGGAAACTAAGTTCCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGT 15132 Query 26558 AAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCC 26617 | | ||| |||| ||| || || |||||||||| ||| || || | | | |||||| Sbjct 15131 AGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCTGCTTCC 15072 Query 26618 CAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATT 26677 || || ||||||||||| | || || || ||| | || | | || || || || Sbjct 15071 CATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAAATA 15012 Query 26678 ATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACA 26737 ||||||||||| || | || || || ||||| || ||||| || ||||| |||||||| Sbjct 15011 ATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACT 14952 Query 26738 GGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTAT 26796 || || || || |||||||| | ||||| ||| | ||| || | | |||| || || Sbjct 14951 GGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGAT 14893 Query 26797 CATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACA 26856 ||| | || || |||||||| | || |||||||| || || || || | ||| | ||| Sbjct 14892 CATCAAAACGCCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACA 14833 Query 26857 AAA 26859 || Sbjct 14832 GAA 14830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147676786844000