Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq20014 576 2e-159 seq2978 502 3e-137 seq2990 408 5e-109 seq10006 96.9 4e-15 seq9089 96.9 4e-15 seq18988 86.0 7e-12 >seq20014 Length=5322 Score = 576 bits (638), Expect = 2e-159 Identities = 708/966 (73%), Gaps = 6/966 (1%) Strand=Plus/Minus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| || ||| | ||||||||| | | | | || Sbjct 1896 GAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTTATTGACCGCA 1837 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| |||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 1836 ACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 1777 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || |||| ||| || | ||||| ||||| || || || ||||| || | ||| Sbjct 1776 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCGGGTGCCATTATTCCT 1717 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || || ||| | || || || || || |||||||||||| || ||||||| Sbjct 1716 ACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTGTTGATGAA 1657 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||||| |||||||||||||||| |||| | || | |||||| | | || | | Sbjct 1656 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1597 Query 155293 GCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGT 155352 ||| |||||| ||||||||||| || |||||| || ||||| |||||||| | Sbjct 1596 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCT 1537 Query 155353 GTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGT 155412 |||||||| || || || || | |||||| ||||| ||| | | || || | ||| Sbjct 1536 GTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGT 1477 Query 155413 CAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 155472 ||||| || ||||||| |||||||| || || ||||||||||| |||| ||| | Sbjct 1476 CAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 1417 Query 155473 GTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGT 155532 || ||||| || || ||||| |||||||||||||| || |||||||| || ||||| ||| Sbjct 1416 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGT 1357 Query 155533 GTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATC 155592 || ||||| || || || || ||||||||| ||||| ||||| || ||| | ||| Sbjct 1356 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATC 1297 Query 155593 CGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 155652 | ||||| || || | || ||| ||| | ||||||| ||||| |||||||||||| Sbjct 1296 AGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAGAA 1237 Query 155653 ACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCC 155712 |||||||| || || || ||||| || || || || || | |||||||| ||||| Sbjct 1236 ACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 1177 Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772 ||||||||||| | | | || |||||||| ||||| |||||||| || | |||||| Sbjct 1176 TTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 1117 Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832 |||||| | ||| | || ||||| |||||||| || |||||||| |||||||| Sbjct 1116 TTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 1057 Query 155833 TCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGC 155889 || ||||| || |||| || || || || ||||| || || ||||||| Sbjct 1056 TCAGTAGTTGA---TAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAACCGT 1000 Query 155890 GCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTT 155949 ||| |||||||||||||| ||||| || ||||| |||||||| |||||||| ||| | Sbjct 999 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGACTTA 940 Query 155950 GCTGCT 155955 |||||| Sbjct 939 GCTGCT 934 >seq2978 Length=1535 Score = 502 bits (556), Expect = 3e-137 Identities = 665/909 (73%), Gaps = 19/909 (2%) Strand=Plus/Plus Query 155062 TTCATTGTCGCCTTCATTGCTG-CACCTCCTGTAGACATTGAT-GGTATT-CGTGAACCC 155118 || ||| ||||||||||||||| | ||||| ||||| |||||| |||||| |||||||| Sbjct 11 TTTATTATCGCCTTCATTGCTGACTCCTCCAGTAGATATTGATAGGTATTACGTGAACCT 70 Query 155119 G---TCGCTGGTTCTTTAA--TGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTA 155173 | |||| ||| | | | ||||| ||||| || || || ||||| || | |||| Sbjct 71 AGTTTTACTGGATCTCTTACTTTTATGG-AACAATATTATTTCGGGTGCCATTATTCCTA 129 Query 155174 GTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAG-CAGCAACTCTTGA-TGA 155231 ||| || || ||| | || || || || || ||||||| ||||| || |||| ||| Sbjct 130 CTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGGCAGCATCTGTTGAATGA 189 Query 155232 GTGGTTGTACAAT-GGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 ||||| |||||| |||||||||| |||| | || | |||||| | | || | Sbjct 190 ATGGTTATACAATAGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAG 249 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 | ||| |||||| ||||||||||| || |||||| || ||||| |||||||| Sbjct 250 CTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTG 309 Query 155351 GTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCG 155410 ||||||||| || || || || | |||||| ||||| ||| | | || || | | Sbjct 310 CTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTG 369 Query 155411 GTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT 155470 ||||||| || ||||||| |||||||| || || ||||||||||| |||| ||| Sbjct 370 GTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGA 429 Query 155471 TCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG 155530 | || ||||| || || ||||| |||||||||||||| || |||||||| || ||||| | Sbjct 430 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTG 489 Query 155531 GTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAA 155590 |||| ||||| || || || || ||||||||| ||||| ||||| || ||| | | Sbjct 490 GTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGA 549 Query 155591 TCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 155650 || | ||||| || || | || ||| ||| | ||||||| ||||| |||||||||| Sbjct 550 TCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAG 609 Query 155651 AAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCAT 155710 |||||||||| || || || ||||| || || || || || | |||||||| ||||| Sbjct 610 AAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 669 Query 155711 CCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCT 155770 ||||||||||| | | | || |||||||| ||||| |||||||| || | |||| Sbjct 670 GTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCT 729 Query 155771 GGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACC 155830 || |||||| | ||| | || ||||| |||||||| || |||||||| ||||||| Sbjct 730 GGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 789 Query 155831 AGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACC 155887 | || ||||| || |||| || || || || ||||| || || |||||| Sbjct 790 AATCAGTAGTTGA---TAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAACC 846 Query 155888 GCGCTGGTCTTGGTATGGAAGTAATGC-ACGAGCGTAACGCTCACAACTTCCCTCTTGAC 155946 | ||| |||||||||||||| |||| | || ||||| |||||||| |||||||| ||| Sbjct 847 GTGCTAACCTTGGTATGGAAGTTATGCAATGAACGTAATGCTCACAATTTCCCTCTAGAC 906 Query 155947 CTTGCTGCT 155955 | |||||| Sbjct 907 TTAGCTGCT 915 >seq2990 Length=15620 Score = 408 bits (452), Expect = 5e-109 Identities = 501/683 (73%), Gaps = 1/683 (0%) Strand=Plus/Plus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| || ||| | ||||||||| | | | | || Sbjct 14854 GAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTTATTGACCGCA 14913 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| |||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 14914 ACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 14973 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || |||| ||| || | ||||| ||||| || || || ||||| || | ||| Sbjct 14974 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCGGGTGCCATTATTCCT 15033 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || || ||| | || || || || || |||||||||||| || ||||||| Sbjct 15034 ACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTGTTGATGAA 15093 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||||| |||||||||||||||| |||| | || | |||||| | | || | | Sbjct 15094 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 15153 Query 155293 GCATACTGTGGTCGTCAGTGGG-AACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTG 155351 ||| |||||| |||||| ||||| || |||||| || ||||| |||||||| Sbjct 15154 TGTTACATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGC 15213 Query 155352 TGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGG 155411 ||||||||| || || || || | |||||| ||||| ||| | | || || | || Sbjct 15214 TGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGG 15273 Query 155412 TCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTT 155471 |||||| || ||||||| |||||||| || || ||||||||||| |||| ||| | Sbjct 15274 TCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGAT 15333 Query 155472 CGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGG 155531 || ||||| || || ||||| |||||||||||||| || |||||||| || ||||| || Sbjct 15334 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGG 15393 Query 155532 TGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAAT 155591 ||| ||||| || || || || ||||||||| ||||| ||||| || ||| | || Sbjct 15394 TGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGAT 15453 Query 155592 CCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGA 155651 | | ||||| || || | || ||| ||| | ||||||| ||||| ||||||||||| Sbjct 15454 CAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAGA 15513 Query 155652 AACTTATAACATTGTTGCTGCTC 155674 ||||||||| || || || |||| Sbjct 15514 AACTTATAATATCGTAGCCGCTC 15536 >seq10006 Length=49147 Score = 96.9 bits (106), Expect = 4e-15 Identities = 114/153 (75%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 155088 TCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAA 155147 ||| ||||| |||||||||||||||||||| || |||| ||| || | ||||| ||||| Sbjct 46031 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 46090 Query 155148 CATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCA---ATTGGTCTCCACTTCTATCC 155204 || || || ||||| || | |||| ||| |||| || || | || || ||||| Sbjct 46091 TATTATTTCGGGTGCCATTATTCCTACTTC---CGCAACTATATGTTTGCATTTTTATCC 46147 Query 155205 TATTTGGGAAGCAGCAACTCTTGATGAGTGGTT 155237 || | ||||| | || || ||||||| ||||| Sbjct 46148 AATATAGGAAGTAACATCTGTTGATGAATGGTT 46180 >seq9089 Length=51936 Score = 96.9 bits (106), Expect = 4e-15 Identities = 114/153 (75%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 155088 TCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAA 155147 ||| ||||| |||||||||||||||||||| || |||| ||| || | ||||| ||||| Sbjct 2132 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 2073 Query 155148 CATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCA---ATTGGTCTCCACTTCTATCC 155204 || || || ||||| || | |||| ||| |||| || || | || || ||||| Sbjct 2072 TATTATTTCGGGTGCCATTATTCCTACTTC---CGCAACTATATGTTTGCATTTTTATCC 2016 Query 155205 TATTTGGGAAGCAGCAACTCTTGATGAGTGGTT 155237 || | ||||| | || || ||||||| ||||| Sbjct 2015 AATATAGGAAGTAACATCTGTTGATGAATGGTT 1983 >seq18988 Length=14164 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 155869 TGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCT 155928 ||||| || || ||||||| ||| |||||||||||||| ||||| || ||||| ||| Sbjct 7909 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 7968 Query 155929 CACAACTTCCCTCTTGACCTTGCTGCT 155955 ||||| |||||||| ||| | |||||| Sbjct 7969 CACAATTTCCCTCTAGACTTAGCTGCT 7995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584688442917000