Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq20014 506 6e-139 seq2978 410 3e-110 seq2990 351 3e-92 >seq20014 Length=5322 Score = 506 bits (560), Expect = 6e-139 Identities = 710/991 (72%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||||||||||||| || |||||||| ||||| || ||||| ||||||||||| || Sbjct 934 AGCAGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAG 993 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||||| | |||||||||||| ||| || || | | || ||||| Sbjct 994 GTTAGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTAC 1053 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 ||| ||||| || || |||||||| ||||| ||||||||||| ||||| | | || Sbjct 1054 TGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 1113 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 | ||| || || | || || ||||| | || ||||| |||| | ||| ||||| Sbjct 1114 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTT 1173 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || ||||| |||||||| || |||||||| ||||| Sbjct 1174 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTATA 1233 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || |||| ||||| || | || || | ||| |||||| |||| ||||| || Sbjct 1234 AGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTC 1293 Query 40889 CCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACC 40945 || || | | |||| || ||| | || ||||||||| ||| | | || || Sbjct 1294 CCTGATCAAACTAGAGGT--TACCAAAGAA-CCATGCATAGCACTAAATAGGGAGCCGCC 1350 Query 40946 AAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTG 41005 || || || || ||||| ||||| || ||||||||||| || |||||||| || || || Sbjct 1351 GAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1410 Query 41006 GAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGA 41065 ||| |||| |||||||||||| || ||| ||||||| ||||||||||||||| || Sbjct 1411 GAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCT 1470 Query 41066 ACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTA 41125 || ||||| | ||| || | ||||| ||||| || |||| | ||||||| || Sbjct 1471 TCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATA 1530 Query 41126 TGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGC 41185 ||| ||| ||||| |||| |||||| || | | | ||||||||||| | ||| Sbjct 1531 TGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1590 Query 41186 GTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTA 41245 ||| ||||| || | ||| ||||| | ||||| |||| ||| || || || ||||| Sbjct 1591 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTA 1650 Query 41246 TAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTT 41305 || ||| || || | | | |||||||| |||||||| ||||| | || || || Sbjct 1651 TAACCATTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGC 1710 Query 41306 AGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAAC 41365 ||| | |||| | || || || ||||||||||| || || | || || || ||||| Sbjct 1711 AGAAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 1770 Query 41366 GGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-AC 41424 || ||||| || ||||| |||||||| || || || || || |||||||| || || || Sbjct 1771 AGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATAC 1830 Query 41425 ATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGC 41484 | | || || || | ||| | || ||||| | || |||||||| || | ||| || | Sbjct 1831 A-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACGCCAAACCATCCAATGTAAAGAC 1889 Query 41485 GGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 |||| |||||||| || | ||||||||| || Sbjct 1890 GGTTTTCGGTGCTGGTTATCCAGTTACAGAA 1920 >seq2978 Length=1535 Score = 410 bits (454), Expect = 3e-110 Identities = 645/909 (71%), Gaps = 17/909 (2%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGT-GCATTACTTCCATACCTA 40587 || ||||||||||||||| || |||||||| ||||| || | |||| ||||||||||| | Sbjct 915 AGCAGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATTGCATAACTTCCATACCAA 856 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | ||||| | |||||||||||| ||| || || | | || |||| Sbjct 855 GGTTAGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGGCCTTGACTATCAACTA 796 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 |||| ||||| || || |||||||| ||||| ||||||||||| ||||| | | | Sbjct 795 CTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAG 736 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || || | || || ||||| | || ||||| |||| | ||| |||| Sbjct 735 TGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGT 676 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| ||||||||| || || | || ||||| |||||||| || |||||||| |||| Sbjct 675 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATTAT 616 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 |||| || |||| ||||| || | || || | ||| |||||| |||| ||||| | Sbjct 615 AAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTT 556 Query 40888 CCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCAC 40944 ||| || | | |||| || ||| | || ||||||||| ||| | | || | Sbjct 555 CCCTGATCAAACTAGAGGT--TACCAAAGAA-CCATGCATAGCACTAAATAGGGAGCCGC 499 Query 40945 CAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTT 41004 | || || || || ||||| ||||| || ||||||||||| || |||||||| || || | Sbjct 498 CGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 439 Query 41005 GGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAG 41064 |||| |||| |||||||||||| || ||| ||||||| ||||||||||||||| || Sbjct 438 GGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGC 379 Query 41065 AACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGT 41124 || ||||| | ||| || | ||||| ||||| || |||| | ||||||| | Sbjct 378 TTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAAT 319 Query 41125 ATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAG 41184 |||| ||| ||||| |||| |||||| || | | | ||||||||||| | ||| Sbjct 318 ATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCA 259 Query 41185 CGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCC-GTTG 41243 ||| ||||| || | ||| ||||| | ||||| |||| ||| || || || ||| Sbjct 258 TGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCTATTG 199 Query 41244 TATAGCCACTCGTCCA--GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTG 41301 |||| ||| || | || ||| | ||||||| |||||||| ||||| | || || | Sbjct 198 TATAACCATTCATTCAACAGATGCTGCCTTCCCATATTGGGTAAAAATGCAAACCTATAG 139 Query 41302 CGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAA-CGAGCCG 41360 | ||| | |||| | || || || ||||||||||||| | | ||| || || Sbjct 138 CTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTGTTCCATAAAAGTAAGAGATCCA 79 Query 41361 G--AAAC-GGGCTCACGT-ATGCC-ATCTATATCTACAGGCGGTG-CTGCGATAAAGGCG 41414 | |||| || |||||| || || ||| |||||||| || || | | || || |||||| Sbjct 78 GTAAAACTAGGTTCACGTAATACCTATCAATATCTACTGGAGGAGTCAGCAATGAAGGCG 19 Query 41415 ATTATGAAA 41423 || || ||| Sbjct 18 ATAATAAAA 10 >seq2990 Length=15620 Score = 351 bits (388), Expect = 3e-92 Identities = 519/726 (71%), Gaps = 11/726 (2%) Strand=Plus/Minus Query 40797 CCAAAGTAA-CCGT-GTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTAT 40854 ||||| ||| |||| | || |||||||| |||||||| || |||| ||||| || | | Sbjct 15551 CCAAAATAAACCGTAGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGT 15492 Query 40855 ACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAACAA 40911 | || | ||| |||||| |||| ||||| |||| || | | |||| || ||| Sbjct 15491 AACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGT--TACCAA 15434 Query 40912 GGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATAT 40971 | || ||||||||| ||| | | || || || || || || ||||| ||||| | Sbjct 15433 AGAA-CCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGT 15375 Query 40972 GGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTC 41031 | ||||||||||| || |||||||| || || ||||| |||| |||||||||||| || | Sbjct 15374 GAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTAC 15315 Query 41032 CACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGA 41091 || ||||||| ||||||||||||||| || || ||||| | ||| || | |||| Sbjct 15314 CAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGA 15255 Query 41092 ATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATAC 41151 | ||||| || |||| | ||||||| ||||| ||| ||||| |||| ||||| Sbjct 15254 AAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATAC 15195 Query 41152 CTAGTCTGTATGAAAGTTCCC-ACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAG 41210 | || | | | |||||||| ||| | ||| ||| ||||| || | ||| ||| Sbjct 15194 CCAGACGGAAACTAAGTTCCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAG 15135 Query 41211 TGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCT 41270 || | ||||| |||| ||| || || || ||||||| ||| || || | | | ||| Sbjct 15134 TGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCTGCT 15075 Query 41271 TCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGAT 41330 ||||| |||||||| ||||| | || || || ||| | |||| | || || || Sbjct 15074 TCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAA 15015 Query 41331 ATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCT 41390 ||||||||||| || || | || || || ||||| || ||||| || ||||| |||||| Sbjct 15014 ATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCT 14955 Query 41391 ACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGG 41449 || || || || || || |||||||| || || ||| | || || || | ||| | || Sbjct 14954 ACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGG 14896 Query 41450 AATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTT 41509 ||||| | || |||||||| || | ||| || ||||| |||||||| || | |||||| Sbjct 14895 GATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTT 14836 Query 41510 ACAAAA 41515 ||| || Sbjct 14835 ACAGAA 14830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143668142695050