Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq20014 605 3e-168 seq2978 529 2e-145 seq2990 416 3e-111 seq18988 82.4 9e-11 >seq20014 Length=5322 Score = 605 bits (670), Expect = 3e-168 Identities = 705/950 (74%), Gaps = 6/950 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| | ||| |||||||| |||||||| ||||| || |||||||||||||| ||||| Sbjct 934 AGCAGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAG 993 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| ||| || |||||||| ||| || || ||| ||||| Sbjct 994 GTTAGCACGGTTAATGATATCAGCCCAAGTGTTAATTAC---ACGGCCTTGACTATCAAC 1050 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || |||||||| |||||||| | ||| | || Sbjct 1051 TACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 1110 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| |||||||| || | | | ||||| Sbjct 1111 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTT 1170 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| || || || || || ||||| || || || || Sbjct 1171 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATATT 1230 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||||||||| ||||| ||||||| | ||| || || | || || || Sbjct 1231 ATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGT 1290 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | |||||| |||||||||||||| || || || || Sbjct 1291 TTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCC 1350 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || ||||| || |||||||||||||||||||||||||| || || Sbjct 1351 GAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1410 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | |||| |||| |||||||||||||| || |||||||| | ||||| || Sbjct 1411 GAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCT 1470 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | || |||| |||||| ||||| || || | || ||||| || || Sbjct 1471 TCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATA 1530 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014 ||| ||| |||||||| |||||||| |||||| || ||||||||||| |||||| Sbjct 1531 TGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1590 Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074 ||| | | || | | |||||| | || | |||| |||| |||||||| || Sbjct 1591 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTA 1650 Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134 ||||| ||||| | || |||||||||||| || || || || || | ||| || || Sbjct 1651 TAACCATTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGC 1710 Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194 ||| |||||| || ||||| ||||| || ||||| || || | || || || | ||| Sbjct 1711 AGAAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 1770 Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254 |||||| | |||||||| ||||| |||||||| || |||||||| || || || || Sbjct 1771 AGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATAC 1830 Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || | ||| | | ||| ||| |||||||| || || ||||| |||| Sbjct 1831 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACGCCAAACCATCCAA 1880 >seq2978 Length=1535 Score = 529 bits (586), Expect = 2e-145 Identities = 671/909 (74%), Gaps = 19/909 (2%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGT-GCATAACTTCCATTCCAA 67416 |||||| | ||| |||||||| |||||||| ||||| || | ||||||||||||| |||| Sbjct 915 AGCAGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATTGCATAACTTCCATACCAA 856 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAA 67473 | || | ||||| ||| || |||||||| ||| || || ||| |||| Sbjct 855 GGTTAGCACGGTTAATGATATCAGCCCAAGTGTTAATTAC---ACGGCCTTGACTATCAA 799 Query 67474 CGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTG 67533 | || ||||||||||| |||||||| || |||||||| |||||||| | ||| | | Sbjct 798 CTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAG 739 Query 67534 CAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGT 67593 ||||||||||||| | || ||||| | ||||| |||||||| || | | | |||| Sbjct 738 CAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGT 679 Query 67594 TGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGT 67653 |||||||| ||||| ||||||||||| || || || || || ||||| || || || | Sbjct 678 TGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCGGCTACGATAT 619 Query 67654 TGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAG 67713 | ||||| ||||||||||| ||||| ||||||| | ||| || || | || || | Sbjct 618 TATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGG 559 Query 67714 TTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCAC 67773 |||| ||||| | | ||| || || | |||||| |||||||||||||| || || || | Sbjct 558 TTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGC 499 Query 67774 CGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTT 67833 |||||||||| ||||| || ||||| || |||||||||||||||||||||||||| || | Sbjct 498 CGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 439 Query 67834 GGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAG 67893 |||| || | |||| |||| |||||||||||||| || |||||||| | ||||| || Sbjct 438 GGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGC 379 Query 67894 AACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGT 67953 |||||||| | || |||| |||||| ||||| || || | || ||||| || | Sbjct 378 TTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAAT 319 Query 67954 ATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCAC 68013 |||| ||| |||||||| |||||||| |||||| || ||||||||||| |||||| Sbjct 318 ATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCA 259 Query 68014 AGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACC-ATTA 68072 ||| | | || | | |||||| | || | |||| |||| ||||| ||| Sbjct 258 TGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCTATTG 199 Query 68073 TACAACCACTCA-TCTAGAGTTGCTG-CTTCCCAGATAGGATAGAAGTGAAGACCGATTG 68130 || ||||| ||| || | || ||||| ||||||| || || || || || | ||| || | Sbjct 198 TATAACCATTCATTCAACAGATGCTGCCTTCCCATATTGGGTAAAAATGCAAACCTATAG 139 Query 68131 CGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACA--TGAGCGAACC 68188 | ||| |||||| || ||||| ||||| || ||||| || || | | || || || Sbjct 138 CTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTGTT-CCATAAAAGTAAGAGATCC 80 Query 68189 TGCAA---CAGGTTCTC-TGATACC-ATCGATATCAACTGGAGGTG-CTGCAATGAATGC 68242 | || |||||| | | ||||| ||| ||||| |||||||| | | |||||||| || Sbjct 79 AGTAAAACTAGGTTCACGTAATACCTATCAATATCTACTGGAGGAGTCAGCAATGAAGGC 20 Query 68243 AATGATGAA 68251 || || || Sbjct 19 GATAATAAA 11 >seq2990 Length=15620 Score = 416 bits (460), Expect = 3e-111 Identities = 493/667 (74%), Gaps = 1/667 (0%) Strand=Plus/Minus Query 67639 GAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTG 67698 |||| || || || || ||||| ||||||||||| ||||| ||||||| | ||| | Sbjct 15536 GAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCGTTAGCAG 15477 Query 67699 ACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCAC 67758 | || | || || ||||| ||||| | | ||| || || | |||||| |||||||||| Sbjct 15476 ATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCAC 15417 Query 67759 TAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGA 67818 |||| || || || ||||||||||| ||||| || ||||| || |||||||||||||||| Sbjct 15416 TAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGA 15357 Query 67819 TGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCA 67878 |||||||||| || ||||| || | |||| |||| |||||||||||||| || ||||||| Sbjct 15356 TGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCA 15297 Query 67879 TTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAG 67938 | | ||||| || |||||||| | || |||| |||||| ||||| || || | Sbjct 15296 TACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTG 15237 Query 67939 ACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTT 67998 || ||||| || ||||| ||| |||||||| |||||||| |||||| || ||||| Sbjct 15236 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTT 15177 Query 67999 -CCCACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGG 68057 |||||| |||||| ||| | | || | | |||||| | || | |||| Sbjct 15176 CCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCA 15117 Query 68058 AAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAG 68117 |||| |||||||| || ||||| ||||| | || |||||||||||| || || || || Sbjct 15116 TAAGGACCACCATTGTATAACCATTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAA 15057 Query 68118 TGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAC 68177 || | ||| || || ||| |||||| || ||||| ||||| || ||||| || || Sbjct 15056 TGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCATAA 14997 Query 68178 ATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATG 68237 | || || || | ||||||||| | |||||||| ||||| |||||||| || |||||| Sbjct 14996 AGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATG 14937 Query 68238 AATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAAC 68297 || || || || || || | ||| | | ||| ||| |||||||| || || ||| Sbjct 14936 AAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACGCCAAAC 14877 Query 68298 CAACCAA 68304 || |||| Sbjct 14876 CATCCAA 14870 >seq18988 Length=14164 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| | ||| |||||||| |||||||| ||||| || |||||||||||||| ||||| Sbjct 7995 AGCAGCTAAGTCTAGAGGGAAATTGTGAGCATTACGTTCATGCATAACTTCCATACCAAG 7936 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAA 67445 || | ||||| ||| || |||||| Sbjct 7935 GTTAGCACGGTTAATGATATCAGCCCAA 7908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566804931687000