Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq16550 109 1e-18 seq10926 109 1e-18 seq5280 100 5e-16 seq16006 95.1 2e-14 >seq16550 Length=20979 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| ||||| || ||||||| || | |||| ||| || || || ||||| Sbjct 17445 ATCCCACCCCTCAACCGCAGTACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCT 17504 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | ||||||||| ||||| || | || || || || || Sbjct 17505 GCCAAAGTACGCCCATCTTCGAGTTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGT 17564 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||||||||| || || || | || | ||| ||| ||||| ||| ||| Sbjct 17565 GGGATTCCTTCTTTATCCTGAATCTTAGCCTTGACATTGTCAATCGTATCAGAACTTTCA 17624 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||| ||| || ||||| || || | ||| || ||||| || ||||| Sbjct 17625 ACCTCTAAAGTGATTGTTTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 17674 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| ||||| || | ||| || ||| || || || Sbjct 17901 ATACCACCACGAAGACGAAGAACCAAATGCAGAGTCGACTCCTTTTGAATGTTGTAATCA 17960 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || ||||| ||||| || | |||||||| || || Sbjct 17961 GCAAGGGTACGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGT 18020 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || || | || | ||| ||||||||| || ||| Sbjct 18021 GGGATCCCTTCCTTATCTTGAATCTTTGCCTTGACATTATCAATAGTATCCGAGCTTTCA 18080 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || ||||| ||||| | ||||||||||| || ||||| Sbjct 18081 ACCTCCAAAGTGATGGTTTTCCCTGTCAAAGTTTTTACAAAAATCTGCAT 18130 >seq10926 Length=11099 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| ||||| || ||||||| || | |||| ||| || || || ||||| Sbjct 8025 ATCCCACCCCTCAACCGCAGTACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCT 8084 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | ||||||||| ||||| || | || || || || || Sbjct 8085 GCCAAAGTACGCCCATCTTCGAGTTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGT 8144 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||||||||| || || || | || | ||| ||| ||||| ||| ||| Sbjct 8145 GGGATTCCTTCTTTATCCTGAATCTTAGCCTTGACATTGTCAATCGTATCAGAACTTTCA 8204 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||| ||| || ||||| || || | ||| || ||||| || ||||| Sbjct 8205 ACCTCTAAAGTGATTGTTTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 8254 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| ||||| | || |||| || | |||| |||||| || || || || Sbjct 8253 ATCCCACCCCTCAACCTCAGCACCAAGTGAAGGGTAGACTCTTTCTGGATGTTGTAATCA 8312 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | | ||| || | |||||||| ||||| || | ||||| || || || Sbjct 8313 GCTAGAGTACGACCATCTTCAAGCTGTTTTCCTGCAAAGATAAGCCTCTGCTGGTCCGGT 8372 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||||||||| || || | || | || ||| ||||| || ||| Sbjct 8373 GGGATTCCTTCTTTATCTTGGATCTTAGCCTTGACGTTGTCAATGGTATCCGAGCTTTCA 8432 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || ||||| ||||| | ||||| ||||| || ||||| Sbjct 8433 ACCTCCAAAGTAATGGTTTTCCCTGTCAAAGTTTTCACAAAAATCTGCAT 8482 >seq5280 Length=29361 Score = 100 bits (110), Expect = 5e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || ||||| | || || ||||| | || | || || ||||| ||||| Sbjct 6545 ATACCTCCCCTCAACCTCAGCACAAGATGGAGGGTCGATTCCTTTTGGATATTGTAGTCT 6486 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | | ||| || | || ||||||||||| || | ||||| || || || Sbjct 6485 GCCAATGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGG 6426 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||| | || | ||| || ||||| || ||| Sbjct 6425 GGGATCCCTTCCTTGTCTTGGATTTTCGCCTTAACATTATCGATGGTATCTGAGCTCTCG 6366 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || || ||||| || || ||||| ||||| || ||||| || Sbjct 6365 ACTTCAAGAGTGATGGTCTTACCAGTGAGAGTTTTAACAAAGATCTGCATATT 6313 >seq16006 Length=16259 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || ||||||| ||||||||| | |||||| || || |||||| Sbjct 13264 ATACCACCACGGAGACGGAGTACCAAATGCAATGTGGACTCTTTTTGGATGTTGTAGTCG 13205 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | ||| || || |||||||| || || || || || || Sbjct 13204 GCCAGGGTCCTGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGC 13145 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| || || | || | || ||| || || || || Sbjct 13144 GGGATCCCTTCTTTATCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCG 13085 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || || || ||||| | || || || || |||||||| Sbjct 13084 ACCTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTGACGAAGATTTGCAT 13035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899428642974000